Shah K K - OmicsDI

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Unknown (5931)
Genomics (110)
Proteomics (90)
Transcriptomics (75)
Metabolomics (15)
Models (7)

Organisms

Homo sapiens (113)
Schizosaccharomyces pombe (80)
Oryza sativa Indica Group (80)
Sinorhizobium meliloti BL225C (80)
Sus scrofa domesticus (80)
Ostreococcus tauri (80)
Saccharomyces cerevisiae (80)
Staphylococcus aureus (80)
Rattus norvegicus (80)
Escherichia coli (80)
Cyanophora paradoxa (80)
Entamoeba histolytica (80)
Physcomitrium patens (80)
Drosophila melanogaster (25)
Mus musculus (19)
Drosophila simulans (6)
Drosophila yakuba (5)
Rattus norvegicus (5)
Drosophila pseudoobscura (4)
Zea mays (3)
Arabidopsis thaliana (3)
Entamoeba histolytica (2)
Saccharomyces cerevisiae (2)
Laccaria bicolor (1)
Bradyrhizobium japonicum (1)
Salmonella enterica (1)
Streptococcus pneumoniae (1)
Escherichia coli K-12 (1)
Danio rerio (1)
Mus (1)

Organisms

Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (121)
pride (80)
EGA (61)
MetaboLights (13)
BioModels (6)
MassIVE (5)
PanoramaPublic (4)
GNPS (2)
ENA (2)
Cell Collective (1)
geo (1)
iProX (1)

Tissue

Cell culture (19)
Epithelial cell (10)
Heart (8)
Permanent cell line cell (5)
Fibroblast (5)
Blood serum (5)
Blood plasma (5)
T cell (4)
Brain (4)
Leukocyte (3)
B cell (3)
Photosynthetic cell (2)
Astrocyte (2)
Melanocyte (2)
Lung (2)
Ovary (2)
Embryonic stem cell (2)
Macrophage (2)
Liver (2)
Eosinophil differentiation (1)
Pancreatic adenocarcinoma cell line (1)
Skeletal muscle tissue (1)
Gastric epithelium (1)
Knee (1)
Cardiocyte (1)
Pancreatic ductal cell (1)
Breast cancer cell (1)
Chondrocyte (1)
Gastrocnemius (1)
Multipotent stem cell (1)

Disease

COVID-19 (4)
Prostate adenocarcinoma (4)
Lymphoma (2)
Pancreatic cancer (2)
Myocardial ischemia (2)
Breast cancer (2)
Human immunodeficiency virus infectious disease (2)
Not applicable (1)
Adult extraosseous osteosarcoma (1)
Hepatitis (1)
Cardiomyopathy (1)
Fibrolamellar carcinoma (1)
B-cell lymphoma (1)
Skin melanoma (1)
Brain glioblastoma multiforme (1)
Heart failure (1)
Osteoarthritis (1)
Malignant neoplasm of ovary (1)
Cancer (1)
Gastric adenocarcinoma (1)
Cardiovascular system disease (1)
Parkinson's disease (1)
Cervix carcinoma (1)
Glioblastoma (1)
Lung cancer (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (80)
Shotgun proteomics (46)
Mass spectrometry (13)
SWATH MS (9)
Affinity purification coupled with mass spectrometry proteomics (8)
Data-dependent acquisition (7)
Bottom-up proteomics (5)
Data-independent acquisition (3)
Illumina Genome Analyzer II (2)
Gel-based experiment (2)
All-ion fragmentation (2)
Top-down proteomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina HiSeq 2000, GenomeWideSNP_6-BirdseedV2 (1)
Illumina Genome Analyzer, Illumina HiSeq 2000, Illumina MiSeq, Affymetrix_U133plus2- (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Illumina MiSeq (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Exactive (Thermo Scientific) (5)
Liquid Chromatography MS - negative - reverse phase (4)
Orbitrap Fusion Lumos (2)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
TSQ Quantis (1)
Synapt XS (1)
LTQ Orbitrap (Thermo Fisher Scientific) (1)
Orbitrap QE-plus (1)
TripleTOF 5600 (1)
Q Exactive HF-X (1)
Orbitrap Eclipse (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - positive (1)

Publication Date

2010 (37)
2011 (24)
2021 (22)
2014 (18)
2022 (18)
2015 (13)
2025 (12)
2024 (11)
2020 (9)
2016 (9)
2013 (8)
2023 (8)
2026 (7)
2019 (7)
2008 (6)
2017 (5)
2009 (5)
2018 (5)
2012 (3)
2007 (2)
2005 (2)
2003 (1)

CHEBI ID

CHEBI:15929 (8)
CHEBI:133221|CHEBI:133222|CHEBI:27823 (5)
CHEBI:133220 (5)
CHEBI:133219 (5)
CHEBI:49265 (5)
CHEBI:18446|CHEBI:18436|CHEBI:18473 (5)
CHEBI:15560 (5)
CHEBI:29043|CHEBI:38266|CHEBI:133208|CHEBI:133210|CHEBI:133211|CHEBI:80494 (5)
CHEBI:133207 (5)
CHEBI:30746 (5)
CHEBI:15756 (5)
CHEBI:18183 (5)
CHEBI:27266 (4)
CHEBI:16566 (4)
CHEBI:28044 (4)
CHEBI:16857 (4)
CHEBI:17895 (4)
CHEBI:16737 (4)
CHEBI:16113 (4)
CHEBI:16196 (4)
CHEBI:30769 (4)
CHEBI:183447 (3)
CHEBI:28527 (3)
CHEBI:32016 (3)
CHEBI:3291 (3)
CHEBI:4640 (3)
CHEBI:32095 (3)
CHEBI:17177 (3)
CHEBI:16269 (3)
CHEBI:50183 (1)

Metabolite Name

2-oxindole-3-acetic acid|5-methoxyindole-2-carboxylic acid|5-hydroxyindole-3-acetic acid (5)
Tuberonic acid (5)
Tuberonic acid methyl ester (5)
Jasmonic acid methyl ester (5)
3-oxo-2-(2-(Z)-pentenyl)-cyclopentane-1-octanoic acid (5)
Cucurbic acid|9,10-dihydrojasmonic acid (5)
Cis/trans-12-oxo-phytodienoic acid (5)
Cis-zeatin-O-glucoside|trans-zeatin-O-glucoside|cis-zeatin-9-glucoside|trans-zeatin-9-glucoside|cis-zeatin-7-glucoside|trans-zeatin-7-glucoside (5)
1-acetylindole-3-carboxaldehyde (5)
Valine (4)
Cholesterol (3)
Serine (3)
Ornithine (3)
Taurine (3)
Isoleucine (3)
Rutin (3)
Benzoic acid (3)
L-Tyrosine (3)
Creatinine (3)
Citric acid (3)
Oleic acid (3)
Uric acid (3)
Uridine (3)
(-)-Rhododendrin (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(E)-Dacarbazine (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
[(4Z)-5-(Methylsulfanyl)-4-penten-2-yn-1-yl]benzene (2)
1-(4-methylphenyl)-3,5-diphenylpent-2-ene-1,5-dione (2)

IsPrivate

False (6)

Submitter Keywords

Ersilia (4)
Machine Learning Model (4)

First Public Date

2026 (1)
2013 (1)

Modelling Approach

Computational model (4)
Ordinary differential equation model (1)

Study type

ChIP-seq (46)
Transcription profiling by array (42)
RNA-seq of coding RNA (18)
Comparative genomic hybridization by array (5)
Cell line - High-throughput sequencing (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)

Release Date

2022 (781)
2025 (716)
2023 (700)
2021 (652)
2024 (613)
2020 (500)
2019 (333)
2018 (296)
2016 (235)
2017 (232)
2015 (208)
2014 (166)
2013 (124)
2026 (102)
2012 (98)
2011 (92)
2010 (90)
2009 (39)
2008 (35)
2007 (15)
2006 (8)
2005 (6)
2003 (3)
2004 (3)
2002 (3)
2000 (2)

Lab affiliation

Bioplatforms Australia (7)
King's College London (5)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
King's College London British Heart Foundation Centre, School of Cardiovascular Medicine and Sciences, King's College London, London, UK. (2)
Chemistry Department, Columbia University in the City of New York (2)
Department of Biology Boston University Boston, MA, USA (1)
King's BHF Centre of Research Excellence King's College London (London, UK) Contact 1: Prof Manuel Mayr (manuel.mayr@kcl.ac.uk) Contact 2: Dr Javier Barallobre-Barreiro (javier.barallobre-barreiro@kcl.ac.uk) (1)
Pfizer, INC. (1)
Physiology and Pharmacology, University of Calgary (1)
GlaxoSmithKline (GSK) (1)
Department of Biochemistry & Molecular Biology Michigan State University (1)
Center for Proteome Analysis, Indiana University School of Medicine, Indianapolis, IN (1)
Hefei Institutes of Physical Science Chinese Academy of Sciences P. O. Box 1138, Hefei ,Anhui, 230031, P.R. China Tel: 86-551-65591413 (1)
IPSIM, INRAE, Montpellier, France (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK. (1)
Department of Pharmacotherapy and Translational Research, College of Pharmacy, University of Florida, Gainesville, Florida, United States of America (1)
Department of Pathology, School of Medicine, Johns Hopkins University (1)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)
College of Animal Science and Technology, Shandong Agricultural University, Taian, Shandong, 271001, P. R. China. (1)
Vanderbilt Proteomics Core (1)
Degenerative Diseases Program, Center for Genetic Disorders and Aging Research, Sanford Burnham Prebys Medical Discovery Institute (1)
QIMR Berghofer Medical Research Institute, Herston, Brisbane, QLD, Australia 4006 (1)
Assistant Professor of Pediatrics Assistant Professor of Pharmacology & Toxicology Indiana University School of Medicine (1)
Bioplatforms Australia (project manager) (1)
Translational Genomic Research Institute (1)
School of Biosciences University of Sheffield United Kingdom (1)
John van Geest Cancer Research Centre, Nottingham Trent University (1)
Department of Biochemistry and Biophysics, University of Pennsylvania School of Medicine (1)
Department of Pathology, Johns Hopkins University School of Medicine (1)

6228 Results

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