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Unknown
(6924)
Proteomics
(126)
Transcriptomics
(119)
Genomics
(104)
Metabolomics
(19)
Models
(5)
Organisms
Homo sapiens
(129)
Schizosaccharomyces pombe
(110)
Oryza sativa Indica Group
(110)
Sinorhizobium meliloti BL225C
(110)
Sus scrofa domesticus
(110)
Ostreococcus tauri
(110)
Saccharomyces cerevisiae
(110)
Staphylococcus aureus
(110)
Drosophila melanogaster
(28)
Mus musculus
(25)
Drosophila simulans
(6)
Drosophila yakuba
(5)
Entamoeba histolytica
(5)
Drosophila pseudoobscura
(4)
Zea mays
(3)
Saccharomyces cerevisiae
(3)
Rattus norvegicus
(3)
Arabidopsis thaliana
(3)
Paxillus involutus ATCC 200175
(2)
Vibrio parahaemolyticus
(1)
Bradyrhizobium japonicum
(1)
Bacteroides thetaiotaomicron
(1)
Bubalus bubalis
(1)
Salmonella enterica
(1)
Salmonella enterica subsp. enterica serovar Enteritidis
(1)
Xenopus laevis
(1)
Listeria monocytogenes
(1)
Streptococcus pneumoniae
(1)
Mycobacterium tuberculosis H37Rv
(1)
Escherichia coli K-12
(1)
Organisms
Paxillus involutus ATCC 200175
(1)
Drosophila melanogaster
(1)
Homo sapiens
(1)
Repository
biostudies-arrayexpress
(168)
pride
(110)
EGA
(50)
MetaboLights
(16)
MassIVE
(11)
BioModels
(4)
ENA
(4)
GNPS
(3)
PanoramaPublic
(3)
geo
(2)
Cell Collective
(1)
iProX
(1)
Tissue
Cell culture
(22)
Brain
(14)
Heart
(9)
Epithelial cell
(8)
Cerebrospinal fluid
(6)
B cell
(6)
Fibroblast
(5)
Permanent cell line cell
(5)
Blood serum
(4)
Blood plasma
(4)
Leukocyte
(3)
T cell
(3)
Embryonic stem cell
(2)
Ovary
(2)
Skeletal muscle
(2)
Cell suspension culture
(2)
Photosynthetic cell
(2)
Primary cell
(2)
Lung
(2)
Liver
(2)
Eosinophil differentiation
(1)
Homo sapiens protein
(1)
Pancreatic adenocarcinoma cell line
(1)
Pituitary gland
(1)
Skeletal muscle tissue
(1)
Gastrocnemius
(1)
Stromal cell of bone marrow
(1)
Knee
(1)
Embryonic fibroblast
(1)
Astrocyte
(1)
Disease
Cardiovascular system disease
(4)
COVID-19
(4)
Prostate adenocarcinoma
(3)
Multiple myeloma
(3)
Lymphoma
(3)
Cancer
(3)
Skeletal muscle atrophy
(2)
Pancreatic cancer
(2)
Myocardial ischemia
(2)
Intestinal type gastric cancer
(1)
Adult extraosseous osteosarcoma
(1)
Hepatitis
(1)
Fibrolamellar carcinoma
(1)
Fanconi anemia
(1)
Endometriosis
(1)
Retinoblastoma
(1)
Duchenne muscular dystrophy
(1)
Congenital disorder of glycosylation
(1)
Brain glioblastoma multiforme
(1)
Lung cancer
(1)
Cervix carcinoma
(1)
Heart failure
(1)
Osteoarthritis
(1)
Glioblastoma
(1)
Malignant neoplasm of ovary
(1)
Disease free
(1)
Acute leukemia
(1)
Technology Type
Mass Spectrometry
(110)
Shotgun proteomics
(67)
Mass spectrometry
(16)
Bottom-up proteomics
(12)
Data-dependent acquisition
(10)
SWATH MS
(9)
Affinity purification coupled with mass spectrometry proteomics
(9)
Data-independent acquisition
(5)
Top-down proteomics
(4)
Illumina Genome Analyzer II
(3)
All-ion fragmentation
(3)
Gel-based experiment
(2)
Illumina HiSeq 2500, ILLUMINA
(1)
Illumina HiSeq 2000, Illumina MiSeq
(1)
Illumina Genome Analyzer, Illumina HiSeq 2000, Illumina MiSeq, Affymetrix_U133plus2-
(1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34
(1)
Affymetrix 6.0, Illumina Genome Analyzer II
(1)
SRM/MRM
(1)
Instrument Platform
Liquid Chromatography MS - positive - reverse phase
(6)
Exactive (Thermo Scientific)
(5)
Liquid Chromatography MS - negative - reverse phase
(4)
Orbitrap Fusion Lumos
(3)
Illumina HiSeq 2500
(2)
NextSeq 500
(2)
Orbitrap Eclipse
(2)
Q Exactive
(2)
Illumina NovaSeq X
(1)
Illumina NovaSeq 6000
(1)
Illumina HiSeq 2000
(1)
TSQ Quantis
(1)
Synapt XS
(1)
Q Exactive Plus
(1)
LTQ Orbitrap (Thermo Fisher Scientific)
(1)
Orbitrap QE-plus
(1)
LTQ Orbitrap Velos
(1)
LTQ Orbitrap Velos Pro
(1)
TripleTOF 5600
(1)
Q Exactive HF
(1)
LTQ Orbitrap
(1)
Q Exactive HF-X
(1)
HILIC_Neg_Synapt_HDMS
(1)
HILIC_Pos_Synapt_HDMS
(1)
RP_Neg_Synapt_HDMS
(1)
RP_Pos_Synapt_HDMS
(1)
Gas Chromatography MS - positive
(1)
Direct infusion MS - positive
(1)
Liquid Chromatography MS - alternating - reverse-phase
(1)
Liquid Chromatography MS - positive - reverse-phase
(1)
Publication Date
2010
(50)
2022
(30)
2011
(29)
2013
(25)
2021
(23)
2014
(20)
2024
(19)
2025
(18)
2020
(12)
2023
(12)
2026
(11)
2015
(10)
2019
(9)
2016
(9)
2008
(8)
2017
(7)
2012
(5)
2005
(5)
2018
(5)
2009
(4)
2007
(3)
2006
(1)
2003
(1)
CHEBI ID
CHEBI:15929
(8)
CHEBI:133221|CHEBI:133222|CHEBI:27823
(5)
CHEBI:133220
(5)
CHEBI:133219
(5)
CHEBI:49265
(5)
CHEBI:18446|CHEBI:18436|CHEBI:18473
(5)
CHEBI:15560
(5)
CHEBI:29043|CHEBI:38266|CHEBI:133208|CHEBI:133210|CHEBI:133211|CHEBI:80494
(5)
CHEBI:133207
(5)
CHEBI:16113
(5)
CHEBI:30746
(5)
CHEBI:16196
(5)
CHEBI:18183
(5)
CHEBI:85299
(4)
CHEBI:17154
(4)
CHEBI:16566
(4)
CHEBI:116314
(4)
CHEBI:48131
(4)
CHEBI:16857
(4)
CHEBI:16737
(4)
CHEBI:17490
(4)
CHEBI:17895
(4)
CHEBI:15756
(4)
CHEBI:64563
(4)
CHEBI:18344
(4)
CHEBI:17687
(4)
CHEBI:140360
(3)
CHEBI:72736
(3)
CHEBI:89935
(3)
CHEBI:50183
(1)
Metabolite Name
2-oxindole-3-acetic acid|5-methoxyindole-2-carboxylic acid|5-hydroxyindole-3-acetic acid
(5)
Tuberonic acid
(5)
Tuberonic acid methyl ester
(5)
Jasmonic acid methyl ester
(5)
3-oxo-2-(2-(Z)-pentenyl)-cyclopentane-1-octanoic acid
(5)
Cucurbic acid|9,10-dihydrojasmonic acid
(5)
Cis/trans-12-oxo-phytodienoic acid
(5)
Cis-zeatin-O-glucoside|trans-zeatin-O-glucoside|cis-zeatin-9-glucoside|trans-zeatin-9-glucoside|cis-zeatin-7-glucoside|trans-zeatin-7-glucoside
(5)
1-acetylindole-3-carboxaldehyde
(5)
Oleic acid
(4)
Uric acid
(4)
Valine
(3)
Rutin
(3)
Kynurenic acid
(3)
Benzoic acid
(3)
L-Tyrosine
(3)
(-)-Rhododendrin
(2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol
(2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide
(2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol
(2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol
(2)
(2S)-2-Amino-8-hydroxyoctanoic acid
(2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one
(2)
(9Z)-9-Octadecenamide
(2)
(E)-Dacarbazine
(2)
(E)-p-coumaric acid
(2)
(Z)-3-butylidene-7-hydroxyphthalide
(2)
[(4Z)-5-(Methylsulfanyl)-4-penten-2-yn-1-yl]benzene
(2)
1,2-Cyclohexadione
(2)
1,3,7-Octanetriol
(2)
IsPrivate
False
(4)
Submitter Keywords
Ersilia
(4)
Machine Learning Model
(4)
First Public Date
2026
(1)
2024
(1)
2014
(1)
2013
(1)
Modelling Approach
Computational model
(4)
Study type
Transcription profiling by array
(75)
ChIP-seq
(48)
RNA-seq of coding RNA
(21)
Unknown experiment type
(6)
Comparative genomic hybridization by array
(4)
ChIP-chip by tiling array
(2)
Cell line - High-throughput sequencing
(2)
High-throughput sequencing
(1)
Transcription profiling by tiling array
(1)
Genotyping by array
(1)
Transcription profiling by RT-PCR
(1)
Other
(1)
MicroRNA profiling by array
(1)
Methylation profiling by array
(1)
Proteomic profiling by array
(1)
Methylation profiling by high throughput sequencing
(1)
RNA-seq of non coding RNA
(1)
Release Date
2022
(928)
2025
(812)
2023
(804)
2021
(788)
2024
(722)
2020
(595)
2019
(420)
2018
(314)
2017
(272)
2016
(272)
2015
(241)
2014
(184)
2013
(160)
2026
(121)
2012
(118)
2010
(113)
2011
(105)
2009
(42)
2008
(41)
2007
(13)
2005
(13)
2006
(7)
2003
(2)
2002
(2)
2004
(1)
2001
(1)
2000
(1)
Lab affiliation
Bioplatforms Australia
(7)
King's College London
(5)
Professor Dept. Cell Biology 615 Michael Street Whitehead 446 Atlanta, GA, 30322 Emory University
(4)
Dept. of Laboratory Medicine, University of California, San Francisco, CA
(3)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048
(3)
CSIR-National Institute of Oceanography
(2)
King's College London British Heart Foundation Centre, School of Cardiovascular Medicine and Sciences, King's College London, London, UK.
(2)
European Molecular Biology Laboratory
(2)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA
(2)
Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States
(2)
Chemistry Department, Columbia University in the City of New York
(2)
King's BHF Centre of Research Excellence King's College London (London, UK) Contact 1: Prof Manuel Mayr (manuel.mayr@kcl.ac.uk) Contact 2: Dr Javier Barallobre-Barreiro (javier.barallobre-barreiro@kcl.ac.uk)
(1)
Pfizer, INC.
(1)
James B. Duke Professor, Departments of Molecular Genetics & Microbiology, Medicine, & Cell Biology Director, Duke Microbiome Center Duke University School of Medicine
(1)
Physiology and Pharmacology, University of Calgary
(1)
Department of Physiology, University of Toronto Ted Rogers Centre for Heart Research Toronto, Ontario, Canada
(1)
Chemical Science Division Oak Ridge National Laboratory
(1)
Assistant Professor Department of Neurology
(1)
GlaxoSmithKline (GSK)
(1)
Department of Biochemistry & Molecular Biology Michigan State University
(1)
IPSIM, INRAE, Montpellier, France
(1)
1The Ritchie Centre, Hudson Institute of Medical Research.Shanti Gurung1(shanti.gurung@hudson.org.au) Jacqueline Piskopos1(jpis0002@student.monash.edu) Joel Steele2 (joel.steele@monash.edu) Ralf Schittenhelm2 (ralf.schittenhelm@monash.edu) Anup Shah2 (anup.shah@monash.edu) Fiona Cousins1 (fiona.cousins@hudson.org.au) Thomas Tapmeier1,3 (thomas.tapmeier@monash.edu) Caroline E. Gargett1,3 (caroline.gargett@hudson.org.au)
(1)
Professor of Biochemistry Director,Institute of Biochemistry II, Group leader, Buchmann Institute for Molecular Life Sciences University Hospital of Goethe University Frankfurt
(1)
Prof. Sanjeeva Srivastava, PhD, FRSB, FRSC Professor and Group Head Department of Biosciences & Bioengineering Indian Institute of Technology Bombay Mumbai – 400076, India Phone: +91-22-2576-7779 Email: sanjeeva@iitb.ac.in
(1)
Department of Biochemistry, Monash University, Clayton,3168, Australia
(1)
Harvard Institutes of Medicine 2nd floor, Room 221 4 Blackfan Circle Boston, MA 02115
(1)
Professor of Chemical Enginnering Department Indian Institute of Technology Delhi
(1)
College of Animal Science and Technology, Shandong Agricultural University, Taian, Shandong, 271001, P. R. China.
(1)
Dr. Sailaja V Elchuri,Department of Nanotechnology, VisionResearch Foundation, Sankara Nethralaya, 18-college Road, Nungambakkam, Chennai 600006 India
(1)
Degenerative Diseases Program, Center for Genetic Disorders and Aging Research, Sanford Burnham Prebys Medical Discovery Institute
(1)
Tags
xref:PubMed:20398323
(1)
xref:PubMed:23788332
(1)
xref:PubMed:38422122
(1)
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Surgical Outcomes and Patient Satisfaction With the Low-Cost, Semi-Rigid Shah Penile Prosthesis: A boon to the Developing Countries.
Not available
S-EPMC8360909
|
biostudies-literature
Cite
Efficient Genome Manipulation by Variants of Site-Specific Recombinases R and TD.
Not available
S-EPMC4798923
|
biostudies-literature
Cite
Nivolumab combined with brentuximab vedotin for R/R primary mediastinal large B-cell lymphoma: a 3-year follow-up.
Not available
S-EPMC10500465
|
biostudies-literature
Cite
Betalain biosynthesis in red pulp pitaya is regulated via HuMYB132: a R-R type MYB transcription factor.
Not available
S-EPMC9837905
|
biostudies-literature
Cite
Pirtobrutinib, a highly selective, noncovalent (reversible) BTKi in R/R follicular lymphoma: phase 1/2 BRUIN study.
Not available
S-EPMC12686794
|
biostudies-literature
Cite
MePCE promotes homologous recombination through coordinating R-loop resolution at DNA double-stranded breaks.
Not available
S-EPMC12261951
|
biostudies-literature
Cite
Enantioselective transacetylation of (R,S)-beta-citronellol by propanol rinsed immobilized Rhizomucor miehei lipase.
Not available
S-EPMC1994055
|
biostudies-literature
Cite
A phase 1-2 trial of DA-EPOCH-R plus ixazomib for MYC-aberrant lymphoid malignancies: the DACIPHOR regimen.
Not available
S-EPMC10987893
|
biostudies-literature
Cite
Sex-specific neurobiological actions of prophylactic (R,S)-ketamine, (2R,6R)-hydroxynorketamine, and (2S,6S)-hydroxynorketamine.
Not available
S-EPMC7360766
|
biostudies-literature
Cite
Break-induced replication is activated to repair R-loop-associated double-strand breaks in SETX-deficient cells.
Not available
S-EPMC12667547
|
biostudies-literature
Cite
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