Shang Chen C - OmicsDI

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Unknown (1002)
Proteomics (34)
Transcriptomics (9)
Metabolomics (3)
Genomics (1)

Organisms

Mycobacterium tuberculosis SP7 (21)
Mycobacterium tuberculosis SP10 (21)
Mycobacterium tuberculosis SP13 (21)
Mycobacterium tuberculosis SP22 (21)
Chlamydomonas reinhardtii (21)
Enterococcus mundtii CRL35 (21)
Oncorhynchus tshawytscha (21)
Pseudomonas canadensis (21)
Pseudomonas aeruginosa PAO1H2O (21)
Human alphaherpesvirus 1 strain 17 (21)
Mycobacterium tuberculosis SP1 (21)
Marchantia polymorpha subsp. ruderalis (21)
Methylocystis sp. (21)
Exiguobacterium sp. SH31 (21)
Palaemonetes sp. common grass shrimp associated circular virus (21)
Amaranthus tricolor (21)
Spirochaeta sp. ELBA (21)
Clavibacter nebraskensis NCPPB 2581 (21)
Porites pukoensis (21)
Porphyromonas gingivalis (21)
Leishmania tarentolae (21)
Porphyromonas gingivalis W83 (21)
Human betaherpesvirus 5 (21)
Homo sapiens (11)
Mus musculus (6)
Oryza sativa Japonica Group (1)
Staphylococcus aureus subsp. aureus RN4220 (1)
Hordeum vulgare (1)
Rattus rattus (1)
Staphylococcus aureus (1)

Repository

pride (21)
iProX (12)
biostudies-arrayexpress (10)
MetaboLights (3)
MassIVE (1)

Tissue

Cell culture (3)
Macrophage (2)
Testis (2)
Liver (2)
Blood (2)
Neuron differentiation (1)
Vesicle budding from membrane (1)
Germ (1)
Sciatic nerve (1)
Mycelium (1)
Early embryonic cell (1)
Plant cell (1)
Bone marrow (1)
Cell suspension culture (1)
HeLa cell (1)
Leaf (1)
Hepatocyte (1)
Permanent cell line cell (1)

Disease

Pneumonia (2)
Disease free (2)
Endometrioid carcinoma (1)
Liver cancer (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (5)
Gel-based experiment (4)
Bottom-up proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Mass spectrometry (2)
Top-down proteomics (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)
SRM/MRM (1)
Data-dependent acquisition (1)

Instrument Platform

Orbitrap Fusion Lumos (1)
6530 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2025 (8)
2022 (7)
2021 (5)
2023 (4)
2015 (3)
2014 (3)
2016 (2)
2013 (2)
2024 (2)
2010 (1)
2007 (1)
2017 (1)
2026 (1)
2020 (1)
2018 (1)

CHEBI ID

CHEBI:17895 (3)
CHEBI:35932 (2)
CHEBI:36274 (2)
CHEBI:18183 (2)
CHEBI:32365 (2)
CHEBI:16031 (2)
CHEBI:17191 (2)
CHEBI:16857 (2)
CHEBI:48131 (2)
CHEBI:16196 (2)
CHEBI:16828 (2)
CHEBI:17115 (2)
CHEBI:16643 (2)
CHEBI:18050 (2)
CHEBI:30653 (2)
CHEBI:15760 (2)
CHEBI:17295 (2)
CHEBI:17196 (2)
CHEBI:16467 (2)
CHEBI:16977 (2)
CHEBI:17053 (2)
CHEBI:17351 (2)
CHEBI:16414 (2)
CHEBI:18089 (2)
CHEBI:30772 (2)
CHEBI:15843 (2)
CHEBI:16530 (2)
CHEBI:9300 (2)
CHEBI:506227 (2)
CHEBI:17203 (2)

Metabolite Name

Nonadeca-10Z-enoic acid (1)
6-Octadecylenic acid (1)
Bishomo-gamma-linolenic acid (1)
N-Acetyl-alpha-neuraminic acid (1)
3-Aminobenzoic acid (1)
5-Amino-levulinic acid (1)
Ketoisovaleric acid (1)
[ring-13C6]-N-methylcheilanthifoline (1)
[ring-13C6]-N-methylscoulerine (1)
[ring-13C6]-chelerythrine (1)
[ring-13C6]-dihydrochelerythrine (1)
[ring-13C6]-allocryptopine (1)
[ring-13C6]-cis-N-methylcanadine (1)
[ring-13C6]-canadine (1)
[ring-13C6]-tetrahydrocolumbamine (1)
[ring-13C6]-sanguinarine (1)
[ring-13C6]-dihydrosanguinarine (1)
[ring-13C6]-protopine (1)
[ring-13C6]-N-methylstylopine (1)
[ring-13C6]-stylopine (1)
[ring-13C6]-cheilanthifoline (1)
[ring-13C6]-scoulerine (1)
[ring-13C6]-reticuline (1)
[ring-13C6]-3'-hydroxy-N-methyl-coclaurine (1)
[ring-13C6]-N-methylcoclaurine (1)
[ring-13C6]-coclaurine (1)
[ring-13C6]-norcoclaurine (1)
[ring-13C6]-dopamine (1)
[ring-13C6]-tyramine (1)
[ring-13C6]-4-hydroxyphenylacetaldehyde (1)

Study type

Transcription profiling by array (7)
ChIP-chip by array (1)
ChIP-seq (1)
RNA-seq of coding RNA (1)

Release Date

2025 (175)
2022 (150)
2023 (130)
2024 (129)
2021 (98)
2020 (82)
2019 (64)
2018 (44)
2026 (27)
2017 (27)
2015 (25)
2016 (20)
2014 (19)
2013 (7)
2010 (4)
2011 (3)
2008 (3)
2009 (2)
2007 (1)
2012 (1)
2005 (1)

Lab affiliation

Institute of Biological Chemistry, Academia Sinica, Taipei, 115201, Taiwan Institute of Biochemical Sciences, National Taiwan University, Taipei, 106319, Taiwan International Institute for Sustainability with Knotted Chiral Meta Matter (SKCM2), Hiroshima University, Hiroshima, 739-8511, Japan (2)
CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese academy of Sciences, 200032, Shanghai, China (1)
Harbin Medical University Cancer Hospital (1)
College of Life Sciences, Wuhan University (1)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China (1)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (1)
Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, China (1)
Laboratory of Functional Microbiology and Livestock Health, School of Animal Science and Technology, Henan University of Science and Technology (1)
Department of Animal Science, Michigan State University, East Lansing, MI 48824, USA. (1)
Institute of Biological Chemistry, Academia Sinica, Nankang, Taipei 115, Taiwan (1)
Fourth Military Medical University (1)
Department and Graduate Institute of Biology and Anatomy, National Defense Medical Center, Taipei, Taiwan (1)
National Center for Liver Cancer, Naval Medical University, Shanghai 201805, P.R. China (1)
State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China 100871. (1)
Nanjing Med Univ, State Key Lab Reprod Med, Dept Histol & Embryol, 140 Hanzhong Rd, Nanjing 210029, Jiangsu, Peoples R China. (1)
College of Life Sciences, Wuhan University, Wuhan 430072, China (1)
The Scripps Research Institute Department of Molecular Medicine (1)
Graduate Institute of Life Sciences, National Defense Medical Center, Taipei, Taiwan (1)
Wuhan University, China (1)
Peking University Health Science Center (1)

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Profiling the target genes for ZIP repressor in MCF-7

Using ChIP-DSL technology from Aviva Systems Biology to find out the whole genome targets for ZIP transcription repressor We analyzed arrays using specific ZIP antibody and negative control to acquire the enriched ratio of each gene

ORGANISM(S): Homo sapiens

2010-05-06 | E-GEOD-13905 | biostudies-arrayexpress

Nanometre-scale 3D defects in Cr₂AlC thin films.

Not available

S-EPMC5430507 | biostudies-literature

Room-temperature 2D semiconductor activated vertical-cavity surface-emitting lasers.

Not available

S-EPMC5599555 | biostudies-literature

C-F bond activation enables synthesis of aryl difluoromethyl bicyclopentanes as benzophenone-type bioisosteres.

Not available

S-EPMC10781780 | biostudies-literature

c-FLIP promotes drug resistance in non-small-cell lung cancer cells via upregulating FoxM1 expression.

Not available

S-EPMC9622852 | biostudies-literature

An optimal Fe-C coordination ensemble for hydrocarbon chain growth: a full Fischer-Tropsch synthesis mechanism from machine learning.

Not available

S-EPMC10498498 | biostudies-literature

Sustained virologic response improved the long-term health-related quality of life in patients with chronic hepatitis C: a prospective national study in China.

Not available

S-EPMC10782531 | biostudies-literature

Human PWWP3A interactome in HEK293 cell line

We generated a stale HEK293 cell line expressing the Myc-tagged PWWP3A to identify potential associated proteins of PWWP3A by AP-MS using anti-Myc antibodies. PWWP3A associated proteins were then identified by mass spectrometry.

ORGANISM(S): Homo sapiens (Human)

2025-04-03 | PXD058791 | Pride

Urolithin C suppresses colorectal cancer progression via the AKT/mTOR pathway.

Not available

S-EPMC11364574 | biostudies-literature

Transcription profiling of endometrial epithelial cells (EECs) to understand actions of tamoxifen in the uterus and its molecular effectors in endometrial carcinogenesis

The molecular explanation for tamoxifen serving as a breast cancer treatment but displaying partial estrogenic in the uterus is not known. Previously, we reported that differential promoter context and cofactor recruitment contribute to the tissue specificity of tamoxifen. Here, we investigated the ...

ORGANISM(S): Homo sapiens

2007-09-08 | E-GEOD-3013 | biostudies-arrayexpress

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