Shaw M-A MA - OmicsDI

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Unknown (1117)
Proteomics (22)
Genomics (13)
Metabolomics (9)
Transcriptomics (7)
Genomic (1)

Organisms

Homo sapiens (30)
Mus musculus (6)
Arabidopsis thaliana (1)
Alphavirus (1)
Influenza A virus (1)
Ixodes scapularis (1)
Mammarenavirus (1)
Neocallimastigomycetes (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Staphylococcus aureus (1)
Struthio camelus (1)
Viola odorata (1)
prokaryotic environmental samples (1)

Repository

pride (20)
EGA (13)
MetaboLights (9)
biostudies-arrayexpress (8)
dbGaP (1)
MassIVE (1)

Tissue

Epithelial cell (3)
Lung (3)
Brain (2)
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Monocyte (2)
Permanent cell line cell (2)
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Cardiovascular system disease (2)
Cardiovascular system (1)
Colon cancer (1)
Disease free (1)
Glioblastoma (1)
Human immunodeficiency virus infectious disease (1)
Lung adenocarcinoma (1)
Primary pulmonary hypertension (1)
Prostate cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (20)
Shotgun proteomics (11)
Mass spectrometry (7)
Top-down proteomics (5)
Bottom-up proteomics (3)
Mass spectrometry assay (2)
NMR spectroscopy (2)
Gel-based experiment (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
NMR spectroscopy assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - positive - hilic (4)
Liquid Chromatography MS - negative - hilic (2)
Nuclear Magnetic Resonance (NMR) - (2)
Bio-Rad CFX96 Real-time System (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 4000 (1)
TripleTOF 6600 (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Nuclear Magnetic Resonance (NMR) (1)
Q Exactive (1)

Publication Date

2022 (7)
2023 (5)
2018 (4)
2021 (3)
2015 (3)
2025 (3)
2020 (3)
2014 (2)
2012 (2)
2024 (2)
2010 (1)
2026 (1)
2017 (1)
2016 (1)

CHEBI ID

CHEBI:17768 (3)
CHEBI:28044 (3)
CHEBI:10072 (2)
CHEBI:145223 (2)
CHEBI:15724 (2)
CHEBI:16020 (2)
CHEBI:16040 (2)
CHEBI:16411 (2)
CHEBI:16449 (2)
CHEBI:16704 (2)
CHEBI:16737 (2)
CHEBI:16914 (2)
CHEBI:16919 (2)
CHEBI:17012 (2)
CHEBI:17084 (2)
CHEBI:17126 (2)
CHEBI:17311 (2)
CHEBI:17368 (2)
CHEBI:17724 (2)
CHEBI:17775 (2)
CHEBI:17802 (2)
CHEBI:18101 (2)
CHEBI:18107 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:18344 (2)
CHEBI:19289 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:2274 (2)

Metabolite Name

3-methylhistidine (2)
(R)-3-hydroxybutyrylcarnitine (1)
1,1-Dimethylbiguanide (Metformin) (1)
1,3,7-trimethylurate (1)
1,3-dimethylurate (1)
1,6-anhydroglucose (1)
1,7-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-arachidonoyl-GPA (20:4) (1)
1-arachidonoyl-GPI (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3)* (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6)* (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2)* (1)
1-linoleoyl-GPI (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylurate (1)
1-methylxanthine (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)

Study type

Transcription profiling by array (2)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of coding RNA (1)

Release Date

2021 (124)
2022 (118)
2023 (111)
2025 (107)
2024 (100)
2020 (90)
2015 (70)
2019 (66)
2016 (59)
2018 (52)
2017 (52)
2014 (46)
2012 (36)
2013 (35)
2011 (18)
2026 (15)
2010 (10)
2009 (6)
2008 (6)
2004 (2)
2007 (1)
2002 (1)

Lab affiliation

BioArCh, Department of Archaeology, University of York (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Department of Biological Sciences, Ohio University (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824, United States (1)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (1)
Department of Microbiology and Immunology University of Maryland School of Medicine USA (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (1)
Dr. Sarah Franklin, Principal Investigator, CVRTI, University of Utah (1)
Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, P.O. Box 999, Richland, WA 99352 (1)
Head of Discovery Proteomics Facility, Oxford (1)
High-Throughput Biological Sciences, Department of Chembical Biology & Therapeutics, St. Jude Children's Research Hospital (1)
IBL-F, Salk Institute for Biological Studies, La Jolla, CA, USA (1)
Mazumdar Shaw Medical Center, Narayana Health, Bangalore, India (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (1)
Novartis Biomedical Research, Cambridge, MA, USA (1)
St. Jude Children's Research Hospital (1)
The Scripps Research Institute (1)
Thoracic and GI Oncology Branch, NCI, NIH (1)
University of California, Davis, CA, USA (1)

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Investigation of cross-platform analytical precision in NMR and UPLC-MS based metabolic-phenotyping

Dataset of six samples of pooled human urine, aliquoted, and independently prepared and aquired by NMR spectroscopy, and UPLC-MS. Each source sample is seperatly prepared and assayed thirteen times. A pooled QC sample and independent external reference of a compariable matrix is also aquired to assi...

2018-08-31 | MTBLS694 | MetaboLights

Evidence of altered fatty acid metabolism in dogs with naturally occurring valvular heart disease and congestive heart failure

INTRODUCTION: Myxomatous mitral valve disease (MMVD) is the most common cardiac condition in adult dogs. The disease progresses over several years and affected dogs may develop congestive heart failure (HF). Research has shown that myocardial metabolism is altered in cardiac dise...

2022-03-31 | MTBLS716 | MetaboLights

Impact of EML4-ALK Variant on Resistance Mechanisms and Clinical Outcomes in ALK-Positive Lung Cancer.

Not available

S-EPMC5903999 | biostudies-literature

Revision of Macroponema Mawson, 1978 (Nematoda: Strongylida) from macropodid marsupials with the description of two new species.

Not available

S-EPMC7285457 | biostudies-literature

Photosymbiont associations persisted in planktic foraminifera during early Eocene hyperthermals at Shatsky Rise (Pacific Ocean).

Not available

S-EPMC9512218 | biostudies-literature

Fecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial

Fecal microbiota transplantation (FMT) represents a potential strategy to overcome resistance to immune checkpoint inhibitors in patients with refractory melanoma; however, the role of FMT in first-line treatment settings has not been evaluated. We conducted a multicenter phase I trial combining ...

2025-02-27 | MTBLS711 | MetaboLights

Antiviral metabolite 3'-Deoxy-3',4'-didehydro-cytidine is detectable in serum and identifies acute viral infections including COVID-19

BACKGROUND: There is a critical need for rapid viral infection diagnostics to enable prompt case identification in pandemic settings and support targeted antimicrobial prescribing.

METHODS: Using untargeted high-resolution liquid chromatography coupled with...

2022-02-10 | MTBLS718 | MetaboLights

Differential effects of electroacupuncture and manual acupuncture on spontaneously hypertensive rats: insights from intestinal microbiota and metabolomics.

Not available

S-EPMC12279516 | biostudies-literature

Optogenetic engineering to probe the molecular choreography of STIM1-mediated cell signaling.

Not available

S-EPMC7042325 | biostudies-literature

Mineral-bound ostrich eggshell peptides survive for up to 3.8 Ma in equatorial Africa

Claims for exceptional preservation of biomolecules in the fossil record are contested. Here we demonstrate the role of surface stabilisation in significantly prolonging protein sequence survival to ~3.8 million years. The intracrystalline environment of calcite ostrich (Struthionidae) eggshell enca...

ORGANISM(S): Struthio camelus (Ostrich)

2018-07-16 | PXD003786 | Pride

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