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ProteomicsA pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease
Addona TA, Shi X, Keshishian H, Mani DR, Burgess M, Gillette MA, Clauser KR, Shen D, Lewis GD, Farrell LA, Fifer MA, Sabatine MS, Gerszten RE, Carr SA. Nat Biotechnol. 2011, 29(7):635-43. doi: 10.1038/nbt.1899. PMCID:PMC3366591. Discovery, AIMS, and MRM datasets Discovery_Tranche_hash: b/quYtp/Q8fY...
2013-12-19 | MSV000078513 | MassIVE
TranscriptomicsTranscription profiling of human prostate cancer primary cell line vs metastasis cell line reveals Protein 4.1B suppresses prostate cancer progression and metastasis
Protein 4.1B is a 4.1/ezrin/radixin/moesin (FERM) domain-containing protein whose expression is frequently lost in a variety of human tumors, including meningiomas, non-small-cell lung cancers and breast carcinomas. However, its potential tumor suppressive function under in vivo conditions remains t...
ORGANISM(S): Homo sapiens 
2008-06-15 | E-GEOD-7930 | biostudies-arrayexpress
TranscriptomicsPaf1C plays novel subunit-specific roles in alternative cleavage and polyadenylation
The PAF complex (Paf1C) has been shown to regulate chromatin modifications, gene transcription, and PolII elongation. Here, we provide the first genome-wide analysis of chromatin occupancy by the entire PAF complex in mammalian cells. We show that Paf1C is recruited not only to promoters and gene bo...
ORGANISM(S): Mus musculus 
2016-01-15 | E-GEOD-72574 | biostudies-arrayexpress
TranscriptomicsTransition from Compensated Hypertrophy to Systolic Heart Failure in the Spontaneously Hypertensive Rat
Full Title: Transition from Compensated Hypertrophy to Systolic Heart Failure in the Spontaneously Hypertensive Rat: Structure, Function, and Transcript Analysis Gene expression changes and left ventricular remodeling associated with the transition to systolic heart failure (HF) were determined in ...
ORGANISM(S): Rattus norvegicus 
2010-02-21 | E-GEOD-19210 | biostudies-arrayexpress
TranscriptomicsCUT&RUN HUDEP1 OE SOX6-Flag
SOX6 CUT&RUN on HUDEP1 over expressing SOX6-Flag. The experiment is done using and anti Flag Ab to assist the genome wide binding profile of SOX6 in HUDEP1 (Human Umbilical cord blood-Derived Erythroid Progenitor-1).
ORGANISM(S): Homo sapiens 
2023-04-07 | E-MTAB-12800 | biostudies-arrayexpress
ProteomicsAptamer-based proteomic profiling reveals novel candidate biomarkers of cardiovascular disease
Ngo D, Sinha S, Shen D, Kuhn E, Keyes M, Shi X, Benson M, O'Sullivan J, Keshishian H, Farrell L, Fifer MA, Vasan RS, Sabatine M, Larson MG, Carr SA, Wang TJ, Gerszten RE. Circulation 2016. Emerging proteomic technologies are beginning to permit the systematic characterization of human plasma sample...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-14 | MSV000079908 | MassIVE
MetabolomicsSponges With Microbial Symbionts Transform Dissolved Organic Matter and Take Up Organohalides (2019 collection assay)

Seawater dissolved organic matter (DOM) is a large reservoir of carbon composed of a complex and poorly characterized mixture of molecules. Sponges have long been known to consume dissolved organic carbon (DOC) from this mixture, but the role of microbial sponge symbionts in this process is compl...

2022-03-11 | MTBLS2200 | MetaboLights
UnknownInhibition of β-catenin–TCF1 interaction delays differentiation of mouse embryonic stem cells
Not available
S-JCBD-201503017 | bioimages
MetabolomicsSponges With Microbial Symbionts Transform Dissolved Organic Matter and Take Up Organohalides (2018 collection assay)

Seawater dissolved organic matter (DOM) is a large reservoir of carbon composed of a complex and poorly characterized mixture of molecules. Sponges have long been known to consume dissolved organic carbon (DOC) from this mixture, but the role of microbial sponge symbionts in this process is compl...

2022-03-11 | MTBLS2199 | MetaboLights
ProteomicsPotato Aphid Salivary Proteome: Identification of Aphid Phosphoproteins and Tomato Host Proteins
Aphids deliver saliva into plants and acquire plant sap for their nourishment using a specialized mouthpart or stylets. Aphid saliva is of great importance as it contains effectors that are involved in modulating host defense and metabolism. Although profiling aphid salivary glands and identifying s...
ORGANISM(S): Macrosiphum Euphorbiae (ncbitaxon:13131) 
2014-12-15 | MSV000078978 | MassIVE
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