Shen Yu Y - OmicsDI

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Unknown (3418)
Proteomics (80)
Transcriptomics (16)
Metabolomics (15)
Genomics (7)
Multiomics (3)

Organisms

Homo sapiens (38)
Bombyx mori (35)
Klebsiella pneumoniae (35)
Schizosaccharomyces pombe (35)
Mus musculus (9)
Arabidopsis thaliana (4)
Rattus norvegicus (2)
Grapholita molesta (2)
Enterococcus faecalis (2)
Oryza sativa (1)
Sus scrofa (1)
Enterococcus casseliflavus (1)
Klebsiella aerogenes (1)
Citrobacter freundii complex (1)
Escherichia coli ATCC 25922 (1)
Morganella morganii (1)
Enterobacter asburiae (1)
Cardamine circaeoides (1)
Bacteroides fragilis (1)
Lactobacillus acidophilus (1)
Mycolicibacterium smegmatis MC2 51 (1)
Pseudomonas aeruginosa (1)
Clostridium butyricum (1)
Klebsiella pneumoniae (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Mus sp. (1)
Solanum tuberosum (1)
Drosophila melanogaster (1)
Staphylococcus aureus (1)
Oryctolagus cuniculus (1)

Organisms

Mus musculus (1)

Repository

iProX (36)
pride (35)
biostudies-arrayexpress (18)
MetaboLights (15)
jPOST (5)
EGA (4)
PeptideAtlas (3)
MassIVE (1)
ENA (1)

Tissue

Cell culture (7)
Testis (4)
Others (3)
Macrophage (3)
Kidney (3)
Heart (2)
Stem cell (2)
Epithelial cell (2)
Sensory ganglion (1)
Peritoneal macrophage (1)
Synovia (1)
Pancreatic ductal cell (1)
Preadipocyte (1)
Seedling (1)
Sperm (1)
Pancreas (1)
Flower bud (1)
Skin (1)
Early embryonic cell (1)
Plant cell (1)
Neuron (1)
Brain (1)
Blood plasma (1)
HeLa cell (1)
Leaf (1)
Primary cell (1)
Permanent cell line cell (1)

Disease

Breast cancer (2)
Neuropathic pain (1)
Obesity (1)
Cardiovascular system disease (1)
Pancreatic cancer (1)
Malaria (1)
Disease free (1)

Technology Type

Mass Spectrometry (35)
Mass spectrometry (14)
Shotgun proteomics (13)
Bottom-up proteomics (9)
Affinity purification coupled with mass spectrometry proteomics (5)
SWATH MS (4)
Gel-based experiment (2)
Mass spectrometry assay (1)
Proteogenomics (1)
Data-independent acquisition (1)
SRM/MRM (1)
Data-dependent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - reverse phase (5)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
6540 Q-TOF LC/MS (Agilent) (2)
Illumina NovaSeq 6000 (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating – hilic (1)
SYNAPT HDMS (Waters) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
QExactive (1)

Publication Date

2022 (15)
2026 (13)
2025 (13)
2016 (9)
2021 (8)
2019 (8)
2024 (7)
2020 (6)
2014 (5)
2018 (4)
2015 (3)
2012 (3)
2023 (3)
2010 (2)
2004 (1)

UNIPROT ID/AC

Q6ZVE7 (3)
Q99619 (3)
Q8N4U5 (3)
Q9UBZ4 (3)
Q96QP1 (3)
Q9Y576 (3)
Q6ZTQ3 (3)
Q9H633 (3)
Q96PC5-2 (3)
Q96PC5 (3)
Q8TDW5 (3)
Q9NXZ2 (3)
Q8IZP6 (3)
Q9UHA2 (3)
Q6MZQ0 (3)
Q9C019 (3)
Q96EP1 (3)
Q8IYM2 (3)
Q86SJ2 (3)
Q02833 (3)
O43194 (3)
Q9Y2C3 (3)
O00338 (3)
Q6NSJ2 (3)
Q17R98 (3)
Q9Y664 (3)
Q9UNP4 (3)
Q96BZ9 (3)
Q8WUA8 (3)
Q3MII6 (3)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:17154 (8)
CHEBI:55328 (8)
CHEBI:16704 (8)
CHEBI:17748 (7)
CHEBI:16919 (7)
CHEBI:15756 (7)
CHEBI:17351 (7)
CHEBI:42504 (6)
CHEBI:17562 (6)
CHEBI:16750 (6)
CHEBI:16870 (6)
CHEBI:17015 (6)
CHEBI:16335 (6)
CHEBI:17568 (6)
CHEBI:17509 (6)
CHEBI:7916 (6)
CHEBI:16467 (6)
CHEBI:17203 (6)
CHEBI:16359 (6)
CHEBI:27480 (6)
CHEBI:17405 (6)
CHEBI:48131 (6)
CHEBI:16347 (6)
CHEBI:18089 (6)
CHEBI:32389 (5)
CHEBI:75168 (5)
CHEBI:32365 (5)
CHEBI:36595 (5)
CHEBI:73074 (5)
CHEBI:46961 (5)

Metabolite Name

Taurine (5)
Cholic acid (5)
Guanosine (5)
Uridine (5)
Stearoylcarnitine (4)
Uracil (4)
Thymine (4)
L-Proline (4)
L-Arginine (4)
L-Palmitoylcarnitine (4)
Taurocholic acid (4)
Adenosine (4)
Urocanic acid (4)
Cytidine (4)
Thymidine (4)
Creatine (4)
Glycerophosphocholine (4)
L-Carnitine (4)
Hypoxanthine (4)
Pyrrolidonecarboxylic acid (3)
LysoPE(16:0/0:0) (3)
Adrenochrome (3)
LysoPE(0:0/18:3(6Z,9Z,12Z)) (3)
LysoPE(18:1(9Z)/0:0) (3)
LysoPC(14:0/0:0) (3)
L-Pipecolic acid (3)
Isonicotinic acid (3)
Taurodeoxycholic acid (3)
Betaine (3)
Sphingosine (3)

First Public Date

2018 (1)

Study type

Transcription profiling by array (5)
Other (3)
RNA-seq of coding RNA (3)
Unknown experiment type (2)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (538)
2022 (440)
2024 (431)
2023 (416)
2021 (384)
2020 (261)
2019 (188)
2018 (149)
2016 (133)
2017 (126)
2015 (85)
2026 (69)
2014 (63)
2013 (45)
2012 (41)
2011 (20)
2010 (13)
2009 (13)
2007 (6)
2008 (5)
2006 (2)
2005 (2)
2004 (1)
2003 (1)
2002 (1)
2001 (1)
1998 (1)
1997 (1)

Lab affiliation

Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (2)
Abbvie Bioresearch Center (2)
1Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. 2Institute of Health Sciences, Shanghai Institutes for Biological Sciences of Chinese Academy of Sciences and SJTU-SM, Shanghai 200025, China. (1)
Institutes of Biomedicine Science, Fudan University (1)
Xi'an International Medical Center Hospital (1)
Institute of Blood Transfusion, Chinese Academy of Medical Sciences & Peking Union Medical College, Chengdu, China, 610052 (1)
Key Laboratory for Metabolic Diseases in Chinese Medicine, Nanjing University of Chinese Medicine (1)
AbbVie Bioresearch Center (1)
Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China (1)
Department of Orthopedics, the Eighth Affiliated Hospital of Sun Yat-sen University, Shenzhen 518003, P.R. China (1)
BGI-Shenzhen,China (1)
Wuhan Univerisity of Science and Technology (1)
State Key Laboratory of Medical Proteomics, National Chromatographic R. & A. Center, CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China. (1)
1. Precision Medicine Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 2. Cardiovascular Disease Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 3. Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. (1)
Proteome Exploration Laboratory, California Institute of Technology, Pasadena, CA, USA (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, Suzhou 215002, China (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, Suzhou 215002, China. (1)
UT MD Anderson Cancer Center (1)
State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, People’s Republic of China (1)
Departments of Critical Care Medicine, the First Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, 150001, China. (1)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (1)
Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Institute of Agricultural Equipment, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School of Nanjing Medical University, Suzhou 215002, China (1)
Department of Pharmacology, Tianjin Key Laboratory of Inflammatory Biology, The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Key Laboratory of Experimental Hematology, School of Basic Medical Sciences, Tianjin Medical University, Tianjin, China. (1)
Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China (1)
West No.30 Xiao Hong Shan, Wuhan, Hubei 430071, China Email: hurui@apm.ac.cn (1)
Institute of Molecular and Cellular Biology, National Taiwan University, No. 1 Sec. 4 Roosevelt Road, Taipei, Taiwan (1)
westlake university (1)

Tags

xref:PubMed:23747202 (1)
xref:PubMed:30457566 (1)
xref:PubMed:32055844 (1)
xref:PubMed:34412677 (1)
xref:PubMed:31903125 (1)

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Molecular mechanism of Dang-Shen-Yu-Xing decoction against Mycoplasma bovis pneumonia based on network pharmacology, molecular docking, molecular dynamics simulations and experimental verification.

Not available

S-EPMC11458528 | biostudies-literature

DNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes

Peripheral blood leukocytes are the most commonly used surrogates to study epigenome-induced risk and epigenomic response to disease related stress. We considered the hypothesis that the TET enzyme catalyzed hydroxymethylation of 5mC to 5hmC might vary among peripheral blood leukocytes and reflect t...

ORGANISM(S): Homo sapiens

2016-07-05 | E-GEOD-70519 | biostudies-arrayexpress

Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine

We explored the hypothesis that adipose tissue contains epigenetically distinct subpopulations of adipocytes that are differentially potentiated to record cellular memories of their environment. Adipocytes are large, fragile, and technically difficult to efficiently isolate and fractionate. We devel...

ORGANISM(S): Sus scrofa

2016-07-20 | E-GEOD-73684 | biostudies-arrayexpress

Jian-Pi-Gu-Shen-Hua-Yu Decoction Alleviated Diabetic Nephropathy in Mice through Reducing Ferroptosis.

Not available

S-EPMC10960652 | biostudies-literature

Dissecting the Underlying Pharmaceutical Mechanism of Chinese Traditional Medicine Yun-Pi-Yi-Shen-Tong-Du-Tang Acting on Ankylosing Spondylitis through Systems Biology Approaches.

Not available

S-EPMC5647417 | biostudies-literature

Mechanism of interventional effect and targets of Zhuyu Pill in regulating and suppressing colitis and cholestasis

Zhuyu pill (ZYP) is a traditional Chinese medicine prescription composed of two drugs, Coptis chinensis Franch. and Tetradium ruticarpum (A. Jussieu) T. G. Hartley, and is commonly used in the clinical treatment of diseases of the digestive system. However, the mechanism underly...

2022-11-02 | MTBLS4980 | MetaboLights

Single-cell RNA sequencing reveals Shen-Bai-Jie-Du decoction retards colorectal tumorigenesis by regulating the TMEM131-TNF signaling pathway-mediated differentiation of immunosuppressive dendritic cells.

Not available

S-EPMC12278398 | biostudies-literature

Yi-Shen-Hua-Shi Granule Alleviates Adriamycin-Induced Glomerular Fibrosis by Suppressing the BMP2/Smad Signaling Pathway.

Not available

S-EPMC9240271 | biostudies-literature

Deciphering potential pharmacological mechanism of Sha-Shen-Mai-Dong decoction on primary Sjogren's syndrome.

Not available

S-EPMC7923330 | biostudies-literature

A Maize Necrotic Leaf Mutant Caused by Defect of Coproporphyrinogen III Oxidase in the Porphyrin Pathway.

Not available