Shi Ce C - OmicsDI

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Unknown (249)
Transcriptomics (74)
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Genomics (6)
Metabolomics (4)

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Homo sapiens (31)
Mus musculus (28)
Chlamydomonas reinhardtii (7)
Enterococcus mundtii CRL35 (7)
Oncorhynchus tshawytscha (7)
Pseudomonas canadensis (7)
Human alphaherpesvirus 1 strain 17 (7)
Marchantia polymorpha subsp. ruderalis (7)
Methylocystis sp. (7)
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biostudies-arrayexpress (82)
pride (7)
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B. dendrobatidis infection (1)
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Mass Spectrometry (7)
Shotgun proteomics (4)
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Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (6)
NextSeq 500 (5)
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-- (1)
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2015 (8)
2013 (8)
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2010 (7)
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CHEBI ID

CHEBI:28279 (2)
CHEBI:75457 (2)
CHEBI:17431 (2)
CHEBI:17443 (2)
CHEBI:17561 (2)
CHEBI:15746 (2)
CHEBI:30794 (2)
CHEBI:30797 (2)
CHEBI:15891 (2)
CHEBI:17752 (2)
CHEBI:1368 (1)
CHEBI:8185 (1)
CHEBI:167540 (1)
CHEBI:175931 (1)
CHEBI:132820 (1)
CHEBI:181036 (1)
CHEBI:75642 (1)
CHEBI:17527 (1)
CHEBI:176884 (1)
CHEBI:49125 (1)
CHEBI:75098 (1)
CHEBI:175611 (1)
CHEBI:27522 (1)
CHEBI:132366 (1)
CHEBI:32491 (1)
CHEBI:80897 (1)
CHEBI:132821 (1)
CHEBI:114954 (1)
CHEBI:66287 (1)
CHEBI:27395 (1)

Metabolite Name

2-Hydroxyethylphosphonic acid (2)
Oleamide (9-Octadecenamide) (2)
L-Leucyl-L-Leucine (2)
L-Prolyl-L-Leucine (2)
L-Tyramine (2)
Anthranilic Acid (2)
Isoguanine (2)
Isochlorogenic acid A (2)
Agmatine (2)
1-Linoleoylglycerol (2)
L-Homocysteine (2)
LysoPC 18:2 (2)
D-Erythrose-4-phosphate (2)
3,7-Di-O-methylquercetin (2)
3-O-Feruloylquinic acid (2)
Quercetin (2)
N-Acetyl-L-Glutamine (2)
2-Aminopurine (2)
4-Hydroxy-L-glutamic acid (2)
2'-Deoxycytidine (2)
L-Homocitrulline (2)
LysoPE 18:0 (2)
Malonic acid (2)
Dihydroxyacetone phosphate (2)
Arachidic acid (2)
Guanine (2)
L-Cysteine (2)
3,3',4-O-Trimethylellagic acid (1)
5,4'-Dihydroxy-3,6,7,3'-tetramethoxyflavone (1)
(-)-Epicatechin-3-(3''-O-methyl)gallate (1)

Study type

Transcription profiling by array (42)
RNA-seq of coding RNA (13)
RNA-seq of coding RNA from single cells (4)
Comparative genomic hybridization by array (3)
Single nucleus RNA sequencing (2)
ChIP-seq (2)
DNA-seq (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
MNase-seq (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Translation profiling (1)
Hi-C (1)
MicroRNA profiling by array (1)

Release Date

2021 (40)
2022 (31)
2020 (29)
2023 (24)
2025 (23)
2015 (23)
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2017 (15)
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2013 (14)
2014 (13)
2011 (9)
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2010 (7)
2009 (7)
2012 (6)
2005 (6)
2006 (4)
2008 (2)
2007 (1)

Lab affiliation

Systems Biology of Signal Transduction, German Cancer Research Center Heidelberg, Germany (1)
Department of Microbiology and Immunology, Stanford University (1)
Shanghai Center for Systems Biomedicine Shanghai Jiaotong University B207, Bldg for Systems Biomedicine 800 Dongchuan Rd Shanghai, China, 200240 (1)
Harvard Department of Stem Cell and Regenerative Biology Cambridge, MA 02138, USA (1)
Institute for Biochemistry and Molecular Biology, Medical Faculty, University of Bonn, 53115 Bonn, Germany (1)
Institute of Molecular Systems Biology, ETH Zürich, Switzerland (1)
The Institute of Cancer Research (1)

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Low input Hi-C datasets for a diffuse large B-cell lymphoma sample, healthy control human B-cells and mouse embryonic stem cells

In this experiment, we've examined chromatin conformation of OG2 (B6; CBA-Tg(Pou5f1-EGFP)2Mnn/J; stock number 004654) mouse stem cells cultured as described in (Shi et al., 2008), using different amounts of starting cells. We performed a modified in situ Hi-C protocol for 6 samples digested with Mbo...

ORGANISM(S): Mus musculus

2018-11-30 | E-MTAB-5875 | biostudies-arrayexpress

Tetracycline Removal by Activating Persulfate with Diatomite Loading of Fe and Ce.

Not available

S-EPMC7728345 | biostudies-literature

Tailoring Electronic Structures via Ce/C Co-Doping and Oxygen Vacancy in TiO<sub>2</sub> Aerogels for Enhanced Solar Fuel Production.

Not available

S-EPMC12940982 | biostudies-literature

Effects of Ce-Rich Mischmetal on Microstructure Evolution and Mechanical Properties of 5182 Aluminum Alloy.

Not available

S-EPMC6947410 | biostudies-literature

C-176 loaded Ce DNase nanoparticles synergistically inhibit the cGAS-STING pathway for ischemic stroke treatment.

Not available

S-EPMC10371767 | biostudies-literature

Wide Concentration Range of Tb3+ Doping Influence on Scintillation Properties of (Ce, Tb, Gd)3Ga2Al3O12 Crystals Grown by the Optical Floating Zone Method.

Not available

S-EPMC8951279 | biostudies-literature

Expression data for mouse embryogenesis from oocyte to newborn

Studies in mouse have led to enormous progress in our understanding of early human development. The identification of genes and the signaling pathways involved in mouse embryogenesis have helped us to better understand fertilization, morulation, gastrulation, organogenesis and embryonic development ...

ORGANISM(S): Mus musculus

2013-09-11 | E-GEOD-39897 | biostudies-arrayexpress

Metabolic characterization of invaded cells of the pancreatic cancer cell line, PANC-1.

Not available

S-EPMC5448609 | biostudies-literature

Impact of lymphopenia on survival for elderly patients with glioblastoma: A secondary analysis of the CCTG CE.6 (EORTC 26062-22061, TROG03.01) randomized clinical trial.

Not available

S-EPMC8577525 | biostudies-literature

Gene Expression Atlas for Human Embryogenesis

Gene expression profiling has provided critical insights into the molecular pathways underlying development of model organisms, however little information is available on regulated gene expression during human embryogenesis. We have now filled this important gap of knowledge by performing genome-wid...

ORGANISM(S): Homo sapiens

2010-07-06 | E-GEOD-15744 | biostudies-arrayexpress

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