Shi Run R - OmicsDI

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Unknown (123)
Proteomics (41)
Transcriptomics (19)
Metabolomics (18)

Organisms

Mycobacterium tuberculosis SP7 (39)
Mycobacterium tuberculosis SP10 (39)
Mycobacterium tuberculosis SP13 (39)
Mycobacterium tuberculosis SP22 (39)
Chlamydomonas reinhardtii (39)
Enterococcus mundtii CRL35 (39)
Oncorhynchus tshawytscha (39)
Pseudomonas canadensis (39)
Human alphaherpesvirus 1 strain 17 (39)
Mycobacterium tuberculosis SP1 (39)
Marchantia polymorpha subsp. ruderalis (39)
Methylocystis sp. (39)
Exiguobacterium sp. SH31 (39)
Palaemonetes sp. common grass shrimp associated circular virus (39)
Amaranthus tricolor (39)
Clavibacter nebraskensis NCPPB 2581 (39)
Porites pukoensis (39)
Porphyromonas gingivalis (39)
Porphyromonas gingivalis W83 (39)
Human betaherpesvirus 5 (39)
Bothrops insularis (39)
Bothrops jararaca (39)
Bothrops jararacussu (39)
Bothrops cotiara (39)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (39)
Severe acute respiratory syndrome coronavirus 2 (39)
Bacillus spizizenii ATCC 6633 = JCM 2499 (39)
Dinosauria (39)
Homo sapiens (14)
Mus musculus (5)

Repository

pride (39)
biostudies-arrayexpress (19)
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Tissue

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Blood (1)

Disease

Ovarian cancer (1)
Neuropathic pain (1)
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Disease free (1)

Technology Type

Mass Spectrometry (39)
Mass spectrometry (17)
Shotgun proteomics (16)
Gel-based experiment (7)
Bottom-up proteomics (6)
SWATH MS (5)
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Affinity purification coupled with mass spectrometry proteomics (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
HDMSE (1)
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SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina HiSeq 2500 (3)
Liquid Chromatography MS - negative - hilic (3)
Tandem Gas Chromatography MS - (2)
Tandem Gas Chromatography MS - positive (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
LTQ Orbitrap Velos (1)
ISQ LT (Thermo) (1)
PTR-MS (1)
Liquid Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2024 (15)
2025 (11)
2023 (10)
2021 (6)
2022 (6)
2015 (4)
2020 (4)
2026 (4)
2018 (3)
2007 (3)
2019 (2)
2013 (2)
2010 (2)
2014 (1)
2012 (1)
2011 (1)
2009 (1)
2017 (1)
2016 (1)

CHEBI ID

CHEBI:16027 (8)
CHEBI:17768 (7)
CHEBI:18257 (7)
CHEBI:17533 (7)
CHEBI:16708 (7)
CHEBI:15741 (7)
CHEBI:17568 (7)
CHEBI:16704 (7)
CHEBI:18012 (7)
CHEBI:32816 (7)
CHEBI:17368 (7)
CHEBI:30769 (7)
CHEBI:17822 (6)
CHEBI:16856 (6)
CHEBI:15978 (6)
CHEBI:16040 (6)
CHEBI:16695 (6)
CHEBI:28875 (6)
CHEBI:15428 (6)
CHEBI:17821 (6)
CHEBI:17154 (6)
CHEBI:15940 (6)
CHEBI:17509 (6)
CHEBI:7916 (6)
CHEBI:18107 (6)
CHEBI:15318 (6)
CHEBI:30915 (6)
CHEBI:17191 (6)
CHEBI:15603 (6)
CHEBI:17895 (6)

Metabolite Name

L-Proline (5)
Adenosine (5)
Guanine (5)
Uracil (4)
Citrulline (4)
Ornithine (4)
L-Histidine (4)
Spermidine (4)
Histamine (4)
Alanine (4)
Adenine (4)
Myristic acid (4)
Guanosine (4)
Creatine (4)
L-Isoleucine (4)
Hypoxanthine (4)
Ethanolamine (3)
D-Glucose (3)
L-Pipecolic acid (3)
Histidine (3)
Glycine (3)
Fumarate (3)
Methionine (3)
Succinate (3)
Pyruvate (3)
Glycerol (3)
Thymine (3)
Pyroglutamic acid (3)
Niacinamide (3)
Lumichrome (3)

Modification

57.021464 (1)

Study type

RNA-seq of coding RNA (9)
Transcription profiling by array (5)
Comparative genomic hybridization by array (2)
Hi-C (2)
Translation profiling (1)

Release Date

2023 (28)
2025 (20)
2024 (16)
2022 (12)
2019 (11)
2020 (11)
2021 (9)
2018 (6)
2015 (4)
2013 (4)
2026 (4)
2007 (3)
2017 (3)
2016 (3)
2014 (2)
2012 (2)
2010 (2)
2011 (1)
2009 (1)

Lab affiliation

School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
National Key Discipline Laboratory, Department of Nutrition and Food Hygiene, School of Public Health, Harbin Medical University, Harbin, P. R. China (1)
Department of Cellular and Molecular Pharmacology, University of California San Francisco, USA (1)
Laboratory of Proteomics, Department of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, the Netherlands (1)
Volker Boehm Gehring Lab, Institute for Genetics, University of Cologne, 50674 Cologne, Germany (1)
NDM Research Building | Old Road Campus | Oxford OX3 7FZ (1)
Department of Comparative Biosciences,University of Illinois Urbana-Champaign (1)
Duke University Department of Cell Biology (1)
Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, USA (1)
Department of Pharmacology, Harbin Medical University, Heilongjiang 163319, China (1)
UT Southwestern Medical Center (1)
Department of Chemistry, Brandeis University, US (1)
Institute for Biochemistry and Molecular Biology, Medical Faculty, University of Bonn, 53115 Bonn, Germany (1)
Shenzhen Key Laboratory of Gene Regulation and Systems Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518005, China (1)
School of Medicine, Shanghai University, Shanghai 200444, China. (1)
Second hospital of Shanxi Medical University (1)
School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Ophthalmology, University of Cologne (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, CAS-HKU Joint Laboratory of Metallomics on Health and Environment & CAS Center for Excellence in Nanoscience, Institute of High Energy Physics & National Center for Nanoscience and Technology of China, Chinese Academy of Sciences, Beijing 100049, P. R. China (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences,Guangzhou, China (1)
School of Food and Biological Engineering, Hefei University of Technology (1)
Sun yat-sen university cancer center (1)
Chemistry Department, University of Minnesota (1)
Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Systems Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518005, China (1)
Research Service (R&D22) VA Portland Health Care System 3710 SW US Veterans Hospital Rd. Portland, OR 97239 USA (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
MIT (1)
School of Life Sciences, University of Dundee, Dundee (1)

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LncRNA H19 promotes the proliferation of pulmonary artery smooth muscle cells through AT₁R via sponging let-7b in monocrotaline-induced pulmonary arterial hypertension.

Not available

S-EPMC6295077 | biostudies-literature

Weighted gene coexpression network analysis identifies hub genes related to KRAS mutant lung adenocarcinoma.

Not available

S-EPMC7593058 | biostudies-literature

Evaluating the Effectiveness of Smart Glasses in Reducing Patient Care Time in Emergency Departments: Cohort Study From the Hangzhou Asian Games.

Not available

S-EPMC12234398 | biostudies-literature

Expression profile of human lymphatic endothelial cells under static or oscillatory shear stress conditions in the presence or absence of FOXC2

Lymphatic valves are specialized units regularly distributed along collecting vessels that allow unidirectional forward propulsion of the lymph, and its efficient transport from tissues to the bloodstream. Lymphatic endothelial cells that cover lymphatic valve sinuses are subjected to complex flow p...

ORGANISM(S): Homo sapiens

2015-11-09 | E-GEOD-60152 | biostudies-arrayexpress

Low input Hi-C datasets for a diffuse large B-cell lymphoma sample, healthy control human B-cells and mouse embryonic stem cells

In this experiment, we've examined chromatin conformation of OG2 (B6; CBA-Tg(Pou5f1-EGFP)2Mnn/J; stock number 004654) mouse stem cells cultured as described in (Shi et al., 2008), using different amounts of starting cells. We performed a modified in situ Hi-C protocol for 6 samples digested with Mbo...

ORGANISM(S): Mus musculus

2018-11-30 | E-MTAB-5875 | biostudies-arrayexpress

Transcription activation by a sliding clamp.

Not available

S-EPMC7892883 | biostudies-literature

Development of a Chitosan-Vaseline Gauze Dressing with Wound-Healing Properties in Murine Models.

Not available

S-EPMC7008328 | biostudies-literature

Structural basis of σ appropriation.

Not available

S-EPMC6755090 | biostudies-literature

Whole brain atlas-based diffusion kurtosis imaging parameters for the evaluation of multiple cognitive-related brain microstructure injuries after radiotherapy in lung cancer patients with brain metastasis.