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TranscriptomicsRevealing novel transcribed sequences absent from the human reference genome by RNA-Seq
These two transcriptome sequencing datasets were generated from two reference RNA samples established by the US FDA-led MicroArray Quality Control project with Illumina next-generation sequencing technology. The reference RNA sample A (UHRR, Catalog #740000) consists of total RNA extracted from 10 h...
ORGANISM(S): Homo sapiens 
2011-12-12 | E-GEOD-30251 | biostudies-arrayexpress
TranscriptomicsComparative analysis of human protein-coding and noncoding RNAs between brain and various cell lines by RNA-Seq
These two transcriptome sequencing datasets were generated from two reference RNA samples established by the US FDA-led MicroArray Quality Control project with Illumina next-generation sequencing technology. The reference RNA sample A (UHRR, Catalog #740000) consists of total RNA extracted from 10 h...
ORGANISM(S): Homo sapiens 
2011-12-12 | E-GEOD-30250 | biostudies-arrayexpress
TranscriptomicsRNA-seq of brain and various cell lines
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series. The sequencing samples of these two RNA-Seq batches 1 and 2 are the same, but they were sequenced twice and in different length. We used these two RNA-Seq batches to carry out two different studies.
ORGANISM(S): Homo sapiens 
2011-12-12 | E-GEOD-30222 | biostudies-arrayexpress
ProteomicsPhospho-proteomics enables classification of cancer subtypes and nomination of druggable kinases for individual patients of diffuse-type gastric cancer
The diffuse-type gastric cancer (DGC) constitutes a subgroup of gastric cancer with poor prognosis and no effective molecular therapies. Here, we report a phosphoproteomic landscape of DGC derived from 83 tumors together with their nearby tissues. Based on phosphorylation, DGC could be classified in...
ORGANISM(S): Homo Sapiens 
2020-03-31 | PXD018293 |
ProteomicsProteomic and phospho-proteomic raw data of Wilms tumor tissue and normal adjacent kidney tissue.
Proteomic and phospho-proteomic raw data of Wilms tumor tissue and normal adjacent kidney tissue from Wilms tumor patients.
ORGANISM(S): Homo Sapiens 
2025-04-30 | PXD063650 |
ProteomicsA region-resolved mucosa proteome of the human stomach
The human gastric mucosa is the most active and functional layer that carries out food digestion and metabolic processes in physiological conditions and also the main origin of carcinogenesis in gastric cancer. Anatomically, the human stomach is divided into 7 regions with physiological functions, b...
ORGANISM(S): Homo Sapiens 
2018-11-26 | PXD011821 |
ProteomicsDDX5-sIL-36R in keratinocytes controls skin inflammation
The DEAD-box (DDX) proteins function in diverse cellular processes including RNA alternative splicing, and are linked to immune-mediated diseases. However, little is known about the roles of DDXs in skin inflammatory diseases. Here, we show that DDX5, one of the founding members of the DDX RNA helic...
ORGANISM(S): Homo Sapiens 
2020-09-09 | PXD021379 |
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