Shin S S - OmicsDI

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Proteomics (165)
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Organisms

Homo sapiens (188)
Mus musculus (76)
Caenorhabditis elegans (26)
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rat gut metagenome (1)
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Organisms

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biostudies-arrayexpress (200)
pride (109)
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Disease

Colon cancer (5)
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Not Available (1)
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Technology Type

Mass Spectrometry (109)
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Affinity purification coupled with mass spectrometry proteomics (13)
Mass spectrometry (7)
Gel-based experiment (7)
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DiaPASEF (2)
SWATH MS (2)
Top-down proteomics (2)
Illumina 610K Quad, Illumina 1.2M (1)
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Illumina OmniQuad 2.5 - CNVpartition (1)
Glycoproteomics (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 2500 (3)
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TripleTOF 6600 (1)
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Flow injection analysis MS - positive (1)
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MS Imaging - (1)
Tandem Gas Chromatography MS - (1)
Unknown (1)

Publication Date

2011 (41)
2020 (37)
2021 (33)
2010 (29)
2014 (26)
2012 (25)
2025 (24)
2013 (23)
2015 (21)
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2026 (18)
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2008 (14)
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2018 (8)
2016 (7)
2009 (3)
2007 (3)
2006 (2)
2005 (2)
2004 (2)
2017 (2)

UNIPROT ID/AC

1433B_HUMAN (17)
1433E_HUMAN (17)
1433F_HUMAN (17)
1433G_HUMAN (17)
1433S_HUMAN (17)
1433T_HUMAN (17)
1433Z_HUMAN (17)
2A5A_HUMAN (17)
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3BHS2_HUMAN (17)
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3MG_HUMAN (17)
41_HUMAN (17)
4ET_HUMAN (17)
4F2_HUMAN (17)
5NT3A_HUMAN (17)
5NTC_HUMAN (17)
5NTD_HUMAN (17)
6PGD_HUMAN (17)
6PGL_HUMAN (17)
9606.ENSP00000228938 (17)
9606.ENSP00000233596 (17)

CHEBI ID

CHEBI:30769 (4)
CHEBI:32816 (4)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:16865 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17992 (3)
CHEBI:18183 (3)
CHEBI:33508 (3)
CHEBI:6650 (3)
CHEBI:15318 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15725 (2)
CHEBI:15940 (2)
CHEBI:15971 (2)
CHEBI:15978 (2)
CHEBI:16015 (2)
CHEBI:16027 (2)
CHEBI:16108 (2)
CHEBI:16199 (2)
CHEBI:16235 (2)
CHEBI:16414 (2)
CHEBI:16467 (2)
CHEBI:16643 (2)
CHEBI:16695 (2)
CHEBI:16708 (2)
CHEBI:16709 (2)

Metabolite Name

Hypoxanthine (3)
Palmitic acid (3)
Sucrose (3)
Adenosine monophosphate (2)
Asparagine (2)
Citric acid (2)
D-Glucose (2)
D-Ribose (2)
Fructose (2)
Glycerol (2)
Glycolic acid (2)
Guanine (2)
Inosine (2)
Isoleucine (2)
L-Cysteine (2)
L-Histidine (2)
L-Isoleucine (2)
L-Leucine (2)
L-Lysine (2)
L-Malic acid (2)
L-Methionine (2)
L-Phenylalanine (2)
L-Proline (2)
L-Serine (2)
L-Threonine (2)
L-Tryptophan (2)
L-Tyrosine (2)
Leucine (2)
Malic acid (2)
Melibiose (2)

First Public Date

2024 (2)
2014 (2)
2020 (1)
2019 (1)

Modelling Approach

Constraint-based model (3)
Ordinary differential equation model (2)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (4)
Cancer Research Center of Toulouse, INSERM UMR 1037, 31037 Toulouse, France Université Toulouse III Paul Sabatier, 31330 Toulouse, France (2)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (2)
EPFL (2)
Amgen Inc. (1)
Asan Medical Center, Clinical Proteomics Core, Republic of Korea (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin (1)
Associate Professor, Department of Laboratory Mediciene, UCSF (1)
BOKU University, Vienna, Austria (1)
Basic Research Lab for “Epigenetic Regeneration of Aged Skeleto-Muscular System (ERASMUS)”, Department of Molecular Genetics and Dental Pharmacology, School of Dentistry, Dental Research Institute, Seoul National University, Seoul, South Korea (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Cancer Program, Monash Biomedicine Discovery Institute, Clayton, VIC 3800, Australia. Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia. (1)
Center For Theragnosis Korea Institute of Science and Technology 5, Hwarang-ro 14-gil, Seongbuk-gu, Seoul (1)
Center for Natural Product Systems Biology, Korea Institute of Science and Technology (1)
Center for Plant Aging Research, Institute for Basic Science, and Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Daegu 42988, Republic of Korea (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea (1)
Center for RNA Research, Institute for Basic Science, Seoul National University (1)
Center for theragnosis, Korea Institute of Science and Technology (1)
Centre de Recherches en Cancérologie de Toulouse (CRCT), Université de Toulouse, Inserm, CNRS, Université Toulouse III-Paul Sabatier, Toulouse, France (1)
Chief, Epithelial Signaling and Transport Section NIH, NIDCR, Building 10, Room 1N-112, Bethesda MD 20892. U.S.A. (1)
DIRECTOR, THE PICOWER INSTITUTE FOR LEARNING AND MEMORYAT MIT PICOWER PROFESSOR OF NEUROSCIENCE, DEPARTMENT OF BRAIN AND COGNITIVE SCIENCES SENIOR ASSOCIATE MEMBER, BROAD INSTITUTE (1)
Daegu Catholic University School of Medicine (1)
Dana Farber Cancer Institute (1)
Dana Farber Cancer Institute, Boston, MA Harvard Medical School, Boston, MA (1)
Department of Biochemistry, College of Life Science and Technology, Institute for Bio-medical Convergence Science and Technology, Yonsei University, Seoul, Republic of Korea (1)
Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, South Korea (1)
Department of Cancer Biology, Dana-Farber Cancer Institute Department of Cell Biology, Harvard Medical School (1)
Department of Laboratory Medicine, UCSF (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (3)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (110)
ChIP-seq (32)
RNA-seq of coding RNA (23)
RNA-seq of non coding RNA (7)
ChIP-chip by tiling array (4)
Comparative genomic hybridization by array (4)
DNA-seq (3)
Unknown experiment type (2)
Genotyping by array (2)
Transcription profiling by RT-PCR (2)
Other (2)
Methylation profiling by array (2)
Proteomic profiling by array (2)
Transcription profiling by MPSS (1)
Transcription profiling by SAGE (1)
Human - Single-cell sequencing (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (922)
2022 (859)
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2021 (773)
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2019 (462)
2018 (394)
2017 (340)
2016 (288)
2015 (253)
2014 (211)
2012 (139)
2013 (124)
2026 (116)
2011 (112)
2010 (87)
2008 (45)
2009 (37)
2007 (23)
2006 (16)
2005 (15)
2004 (6)
2002 (3)
2001 (3)
2000 (3)
1999 (2)
1998 (1)

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Transcription profiling of mouse NIH3T3 cell line cultured with and withput FGF and treated with the MEK Inhibitor U0126 at 3 time points before FGF addition reveals ERK-dependent downregulated genes have the ability to block S phase entry

The ERK family of MAP kinase plays a critical role in growth factor-stimulated cell cycle progression from G0/G1 to S phase. But, how sustained activation of ERK promotes G1 progression has remained unclear. Here, our systematic analysis on the temporal program of ERK-dependent gene expression shows...

ORGANISM(S): Mus musculus

2007-11-24 | E-GEOD-4739 | biostudies-arrayexpress

Report on the complete organelle genomes of Orobanche Filicicola Nakai ex Hyun, Y. S. Lim & H. C. Shin (Orobanchaceae): insights from comparison with Orobanchaceae plant genomes.

Not available

S-EPMC11834515 | biostudies-literature

Expression data from clinical S. aureus strains

Microarray hybridization analysis was conducted to identify genes that may affect biofilm formation. Isolates from the 50 clinical isolates, two from LSG (strain number 2 and 7) and two from HSG donors (strain number 10 and 33) were selected. We monitored relative mRNA abundance in the four clinical...

ORGANISM(S): Staphylococcus aureus

2013-02-13 | E-GEOD-44268 | biostudies-arrayexpress

Simultaneous detection of Streptococcus pneumoniae, S. mitis, and S. oralis by a novel multiplex PCR assay targeting the gyrB gene.

Not available

S-EPMC3592088 | biostudies-literature

Aberrant expression of S-SCAM causes the loss of GABAergic synapses in hippocampal neurons.

Not available

S-EPMC6952429 | biostudies-literature

Structural and functional insights into (S)-ureidoglycine aminohydrolase, key enzyme of purine catabolism in Arabidopsis thaliana.

Not available

S-EPMC3365701 | biostudies-literature

S-amlodipine plus chlorthalidone vs. S-amlodipine plus telmisartan in hypertensive patients unresponsive to amlodipine monotherapy: study protocol for a randomized controlled trial.