Sort   by:  
 Page size 
GenomicsA short ORF-encoded transcriptional regulator
A short ORF-encoded transcriptional regulator
PRJNA689606 | ENA
TranscriptomicsA short ORF-encoded transcriptional regulator
Recent technological advances have expanded the annotated protein coding content of mammalian genomes, as hundreds of previously unidentified, short open reading frame (ORF)-encoded peptides (SEPs) have now been found to be translated. Although several studies have identified important physiological...
ORGANISM(S): Homo sapiens 
2021-01-11 | GSE164239 | GEO
UnknownA short ORF-encoded transcriptional regulator.
Not available
S-EPMC7848545 | biostudies-literature
ProteomicsDiscovery of lincRNA-encoded Peptides: An Integrated Transcriptomics, Proteomics and Bioinformatics Approach
Long noncoding RNA (lncRNA) refers to the family of RNA transcripts with more than 200 nucleotides in length, but cannot encode proteins. lincRNA (long intergenic noncoding RNA) is a subset of lncRNA that do not overlap with known genes. Increasing evidences have shown that some of these transcripts...
ORGANISM(S): Mus musculus (Mouse) 
2020-05-12 | PXD013892 | Pride
Noncoding Micropeptide Orf prediction Sorf Lncrna Lincrna peptide Lincrna 
ProteomicsFirst evidence that a protein coded by a short ORF, not by the annotated CDS is the main gene product
Proteogenomics and ribosome profiling concurrently show that genes may code for both a large and one or more small proteins translated from annotated coding sequences (CDSs) and unannotated alternative open reading frames (named alternative ORFs or altORFs), respectively, but the stoichiometry betwe...
ORGANISM(S): Homo sapiens (Human) 
2018-11-21 | PXD008147 | Pride
Crispr-cas9 Short orf Targeted proteomics Translation 
UnknownIn vitro inhibition of transmissible gastroenteritis coronavirus replication in swine testicular cells by short hairpin RNAs targeting the ORF 7 gene.
Not available
S-EPMC3492083 | biostudies-literature
UnknownTranslation of the downstream ORF from bicistronic mRNAs by human cells: Impact of codon usage and splicing in the upstream ORF.
Not available
S-EPMC11751868 | biostudies-literature
TranscriptomicsK562 polyA RNA-Seq
RNA-Seq reads and TopHat (Trapnell et al. Bioinformatics 2009) alignments of K562 cell-line transcriptome. These were used to validate the expression of short peptides idenitified by Mass-Spectrometry in K562 cells. K562 polyA+ RNA (Batch 1) and total RNA (batch 2) was purchased from Ambion. We use...
ORGANISM(S): Homo sapiens 
2012-11-14 | E-GEOD-34740 | biostudies-arrayexpress
UnknownIdentification of calpain substrates by ORF phage display.
Not available
S-EPMC3175615 | biostudies-literature
OtherSingle-cell ORF perturbation screening of an enriched viral microprotein library in hTERT RPE-1 cells using 10x Genomics Flex fixed-RNA profiling
Viral genomes encode large numbers of short open reading frames whose products (microproteins) remain largely uncharacterized. To assay their cellular consequences at scale, we assembled an enriched viral microprotein ORF library in the doxycycline-inducible pANDORA lentiviral vector and delivered i...
ORGANISM(S): Homo sapiens 
2026-08-21 | GSE344535 | GEO
Sort   by:  
 Page size