Si Can C - OmicsDI

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Unknown (2521)
Proteomics (158)
Transcriptomics (152)
Metabolomics (36)
Genomics (28)
Models (1)
Genomic (1)

Organisms

Homo sapiens (125)
Mus musculus (57)
Escherichia coli (16)
Saccharomyces cerevisiae (11)
Arabidopsis thaliana (10)
Schizosaccharomyces pombe (9)
Rattus norvegicus (8)
cellular organisms (4)
Zea mays (4)
Thalassiosira pseudonana CCMP1335 (3)
Mycobacterium tuberculosis (3)
Caenorhabditis elegans (3)
Podospora anserina (2)
Solanum chilense (1)
Bacillus subtilis subsp. subtilis str. JH642 (1)
Sorghum propinquum (1)
Solanum pennellii (1)
Haliotis asinina (1)
Salmonella enterica (1)
Arabidopsis lyrata (1)
Phaeodactylum tricornutum (1)
Chlamydomonas reinhardtii (1)
Rattus rattus (1)
Saccharomyces cerevisiae S288C (1)
Streptococcus pneumoniae (1)
Brassica oleracea var. italica (1)
Salmo salar (1)
Oncorhynchus mykiss (1)
Triticum aestivum (1)
Pseudomonas aeruginosa (1)

Organisms

Homo sapiens (5)
Podospora anserina (1)
Caenorhabditis elegans (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (158)
pride (134)
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geo (7)
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dbGaP (1)
GNPS (1)
PeptideAtlas (1)

Tissue

Cell culture (24)
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Disease

Disease free (4)
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Not applicable (1)
Colon cancer Dukes C (1)
Midgut carcinoid liver metastasis (1)
Osteosarcoma (1)
Ovarian cancer (1)
Invasive ductal carcinoma (1)
Acrodysostosis (1)
Aspergillosis (1)
Autistic disorder (1)
Brain cancer (1)
Chikungunya (1)
Human cytomegalovirus infection (1)
Idiopathic pulmonary fibrosis (1)
Immunoglobulin light chain amyloidosis (1)
Influenza (1)
Lung adenocarcinoma (1)
Lung squamous cell carcinoma (1)
Major depressive disorder (1)
Malignant neoplasm of ovary (1)
Multiple myeloma (1)
Non-small cell lung carcinoma (1)

Technology Type

Mass Spectrometry (134)
Shotgun proteomics (50)
HDMSE (45)
Mass spectrometry (28)
Bottom-up proteomics (23)
MSE (13)
SWATH MS (13)
Data-independent acquisition (10)
Data-dependent acquisition (9)
Mass spectrometry assay (6)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Gel-based experiment (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Top-down proteomics (4)
Immunopeptidomics (2)
NMR spectroscopy (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (14)
Liquid Chromatography MS - negative - reverse phase (11)
Illumina NovaSeq 6000 (6)
SYNAPT G2-Si (4)
Illumina HiSeq 2000 (3)
Q Exactive (3)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
BioChipReader (1)
Nanodrop N1000 spectrophotometer (1)
ScanArray Lite [PerkinElmer] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Illumina Genome Analyzer IIx (1)
G2565BA DNA microarray scanner [Agilent] (1)
ScanArray Express HT [PerkinElmer] (1)
Axon GenePix 4000B scanning hardware (1)
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Illumina HiSeq 4000 (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
MS:1000031 (1)
MS:1001581 (1)
Orbitrap Exploris 480 (1)
Q Exactive HF (1)
TimsTOF Pro (1)

Publication Date

2024 (35)
2025 (29)
2022 (29)
2023 (24)
2021 (22)
2010 (21)
2026 (18)
2020 (18)
2011 (17)
2013 (16)
2016 (15)
2014 (15)
2019 (13)
2015 (13)
2008 (12)
2009 (10)
2004 (10)
2012 (8)
2018 (7)
2007 (7)
2017 (6)
2006 (6)
2005 (6)
2003 (1)

UNIPROT ID/AC

A0A024RAN2 (1)
A0A024RC46 (1)
A0A087WVZ5 (1)
A0A087WXI0 (1)
A0A087X1S3 (1)
A0A0A0MR66 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A1A4S6 (1)
A2BFH1 (1)
A2RTX5 (1)
A3KN83 (1)
A4D110 (1)
A5A3E0 (1)
A5YKK6 (1)
A6NCN2 (1)
A6NDG6 (1)
A6NHL2 (1)
A6NHQ2 (1)
A6NHR9 (1)
A6NIH7 (1)
A6NMQ1 (1)
A6NNZ2 (1)
A7E2V4 (1)
A8CG34 (1)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:15354 (7)
CHEBI:15428 (7)
CHEBI:15891 (7)
CHEBI:15603 (6)
CHEBI:16335 (6)
CHEBI:16414 (6)
CHEBI:16828 (6)
CHEBI:17750 (6)
CHEBI:15611 (5)
CHEBI:15741 (5)
CHEBI:15756 (5)
CHEBI:15940 (5)
CHEBI:16015 (5)
CHEBI:16027 (5)
CHEBI:16196 (5)
CHEBI:16643 (5)
CHEBI:16811 (5)
CHEBI:16856 (5)
CHEBI:16865 (5)
CHEBI:16977 (5)
CHEBI:17015 (5)
CHEBI:17053 (5)
CHEBI:17191 (5)
CHEBI:17196 (5)
CHEBI:17295 (5)
CHEBI:17351 (5)
CHEBI:17895 (5)
CHEBI:18019 (5)
CHEBI:33697 (1)
CHEBI:35222 (1)

Metabolite Name

Glycine (5)
Adenosine (4)
Betaine (4)
Choline (4)
L-Phenylalanine (4)
L-Tryptophan (4)
L-Tyrosine (4)
L-Valine (4)
Sarcosine (4)
Anserine (3)
Carnitine (3)
Creatine (3)
Gluconolactone (3)
Histamine (3)
L-Carnitine (3)
L-Glutamine (3)
L-Isoleucine (3)
L-Leucine (3)
L-Pipecolic acid (3)
LPC(16:0) (3)
LPC(18:0) (3)
LPC(18:1) (3)
LPC(20:4) (3)
LPE(18:0) (3)
LPE(18:1) (3)
Lactulose (3)
Leu-Ile (3)
Maltotriose (3)
N1-Acetylspermidine (3)
Oleamide (3)

First Public Date

2024 (4)
2021 (3)
2014 (3)
2025 (2)
2026 (1)
2022 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Center for Neuroscience and Cell Biology – University of Coimbra (6)
Northeastern University (4)
Department of Chemistry & Chemical Biology, Northeastern University (3)
Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
Department of Chemistry, King’s College London, SE1 1DB, London, UK Faculty of Biology, Medicine and Health, School of Biological Sciences, The University of Manchester, M13 9PT, Manchester, UK Manchester Institute of Biotechnology, The University of Manchester, M1 7DN, Manchester, UK (2)
Dept. of Biochemistry, Laboratory of Neuroproteomic, Biology Institute, Brazil (2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia Universidade Estadual do Norte Fluminense Darcy Ribeiro Av. Alberto Lamego 2000 Campos dos Goytacazes-RJ, Brazil 28013-602 (2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (2)
Protein Biogenesis Lab, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT (2)
The University of Manchester (2)
1 Max Planck Fellow Group Molecular Physiology of Microbes, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany 2 Center for Synthetic Microbiology (SYNMIKRO), Marburg, Germany 3 Department of Chemistry, University of Marburg, Marburg, Germany (1)
1) Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, United Kingdom 2) Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, United Kingdom (1)
1. Technische Universität Berlin, Chair of Bioanalytics,Germany 2. Wellcome Centre for Cell Biology, University of Edinburgh, UK. 3. Si-M/"Der Simulierte Mensch", a Science Framework of Technische Universität Berlin and Charité - Universitätsmedizin Berlin, Germany. (1)
1Integrated and Urban Plant Pathology Laboratory, University of Liège, Gembloux Agro-Bio Tech, 2 Passage des Déportés 5030 Gembloux, Belgium (1)
Agricultural Center Baden-Württemberg, Fisheries Research Station, Germany (1)
Associate Professor, University of Washington (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Biological Sciences and Health Center, University of Taquari Valley - Univates, Lajeado, RS, Brazil (1)
Biology Institute, Graduate Program in Plant Physiology, Federal University of Pelotas, Pelotas, Brazil. (1)
CNC - Center for Neuroscience and Cell Biology, University of Coimbra (1)
CNC-Center for Neuroscience and Cell Biology, University of Coimbra, 3004-517 Coimbra, Portugal; Biocant, Biotechnology Innovation Center, 3060-197 Cantanhede, Portugal (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, CB2 1QR UK (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Bennett Laboratory Mass Spectrometry & Proteomics (1)
Center for Neuroscience and Cell Biology of theUniversity of Coimbra (1)
Center for Synthetic Microbiology & Department of Chemistry, Marburg University,Hans-Meerwein-Straße 4, 35043 Marburg, Germany (1)
Center for Synthetic Microbiology (SYNMIKRO) & Faculty of Chemistry, Philipps-University Marburg, 35043 Marburg, Germany (1)
Charite- Universitaetsmedizin Berlin, 10117 Berlin, Germany (1)
Defence Research & Development Establishment, Gwalior. (1)

IsPrivate

False (1)

Modification

+3amu) (1)
N6 (1)
Not available (1)

Study type

Transcription profiling by array (88)
RNA-seq of coding RNA (18)
ChIP-seq (9)
Comparative genomic hybridization by array (8)
Unknown experiment type (7)
RNA-seq of non coding RNA (6)
ChIP-chip by tiling array (3)
MicroRNA profiling by array (3)
RNA-seq of coding RNA from single cells (3)
Other (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
MNase-seq (1)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
DNA-seq (1)

Release Date

2022 (351)
2023 (319)
2021 (276)
2025 (273)
2024 (259)
2020 (217)
2019 (190)
2018 (141)
2017 (125)
2015 (90)
2016 (89)
2014 (49)
2013 (46)
2010 (40)
2011 (39)
2026 (38)
2012 (37)
2009 (28)
2008 (19)
2007 (15)
2004 (11)
2006 (10)
2005 (7)
2003 (5)
2002 (2)
2001 (2)
1998 (1)

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Silicon metabolism in diatoms

We investigated the effects of extracellular silicic acid on the whole Phaeodactylum triconutum transcriptome. In this work, global transcription analyses were combined with comparative studies of other elements, and detailed analyses of the silicon transporters. Our results provide insight on Si-se...

ORGANISM(S): Phaeodactylum tricornutum

2009-09-29 | E-GEOD-12015 | biostudies-arrayexpress

Gene expression profiling of small intestine (SI) NKp46+RORgt+ and NKp46+RORgt- Innate Lymphoid Cells (ILCs)

The aim of this study was to analyze the global transcriptional profiles of small intestine (SI) Innate Lymphoid Cells (ILCs) expressing the NK cell marker NKp46. Based on differential expression of the RORgt transcription factor SI NKp46+ ILCs can be divided in NKp46+RORgt- and NKp46+RORgt+ cells. ...

ORGANISM(S): Mus musculus

2011-06-20 | E-GEOD-29777 | biostudies-arrayexpress

Electrochemical and X-ray Photoelectron Spectroscopic Study of Early SEI Formation and Evolution on Si and Si@C Nanoparticle-Based Electrodes

Not available

S-EPMC9699462 | biostudies-literature

Si-C is a method for inferring super-resolution intact genome structure from single-cell Hi-C data.

Not available

S-EPMC8285481 | biostudies-literature

Room-Temperature-Observable Interconversion Between Si(IV) and Si(II) via Reversible Intramolecular Insertion Into an Aromatic C-C Bond.

Not available

S-EPMC10092829 | biostudies-literature

Next Generation Sequencing Facilitates Quantitative Analysis of si-nc and si-SRSF11 LOVO Transcriptomes