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Unknown (212)
Transcriptomics (12)
Proteomics (4)
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Metabolomics (2)

Organisms

Homo sapiens (8)
Alphavirus (4)
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Betaherpesvirinae (4)
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EFO:0001352 (4)
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mouse gut metagenome (1)
mixed sample (1)
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Repository

biostudies-arrayexpress (12)
pride (4)
EGA (3)
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Tissue

Kidney (3)
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Technology Type

Mass Spectrometry (4)
Mass spectrometry (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000 (1)
Data-independent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (3)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina Genome Analyzer IIx (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)

Publication Date

2016 (3)
2025 (3)
2021 (2)
2010 (2)
2020 (1)
2018 (1)
2015 (1)
2012 (1)
2011 (1)
2024 (1)
2023 (1)
2022 (1)

CHEBI ID

CHEBI:42111 (2)
CHEBI:141588 (2)
CHEBI:7676 (2)
CHEBI:27997 (2)
CHEBI:24266 (2)
CHEBI:16856 (2)
CHEBI:16865 (2)
CHEBI:17549 (2)
CHEBI:37024 (2)
CHEBI:28867 (2)
CHEBI:7916 (2)
CHEBI:17311 (2)
CHEBI:16113 (2)
CHEBI:16919 (2)
CHEBI:44215 (2)
CHEBI:18183 (2)
CHEBI:16668 (2)
CHEBI:15741 (2)
CHEBI:28875 (2)
CHEBI:18237 (2)
CHEBI:17929 (2)
CHEBI:17533 (2)
CHEBI:28716 (2)
CHEBI:15891 (2)
CHEBI:183249 (1)
CHEBI:134575 (1)
CHEBI:43799 (1)
CHEBI:72426 (1)
CHEBI:65302 (1)
CHEBI:64521 (1)

Metabolite Name

Beta-Nicotinamide adenine dinucleotide (2)
PC 40:6|PC 18:1_22:5 (1)
PC 38:4|PC 18:1_20:3 (1)
PC 33:1|PC 17:0_16:1 (1)
PC 31:1|PC 15:0_16:1 (1)
PC 31:0|PC 14:0_17:0 (1)
PC 29:0|PC 14:0_15:0 (1)
Glutamylaspartic acid (1)
Isobutyrylcarnitine (1)
PC 32:2|PC 16:1_16:1 (1)
Glutathione (reduced) (1)
PC 40:7|PC 18:2_22:5 (1)
PC 30:1|PC 14:0_16:1 (1)
PC 28:0|PC 14:0_14:0 (1)
PE 34:2|PE 16:1_18:1 (1)
PE 36:2|PE 18:1_18:1 (1)
Hydroxyprolyl-Glutamate (1)
1-Monostearin (1)
Nervonic acid (1)
N,N-Dimethylarginine (1)
N-Acetylglutamic acid (1)
2-Aminoadipic acid (1)
Gamma-Glutamylglutamine (1)
Gamma-Glutamylglutamic acid (1)
Valerylcarnitine (1)
Hydroxyprolyl-Leucine (1)
Glutamylvaline (1)
Glycylleucine (1)
S-Hydroxymethylglutathione (1)
Gamma-Glutamylisoleucine (1)

Study type

CLIP-seq (4)
Transcription profiling by array (4)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of coding RNA (1)

Release Date

2021 (31)
2022 (21)
2020 (19)
2023 (18)
2019 (18)
2025 (17)
2024 (16)
2018 (13)
2016 (12)
2014 (12)
2017 (10)
2015 (8)
2012 (8)
2010 (8)
2013 (4)
2011 (3)
2026 (3)
2009 (2)
2006 (1)

Lab affiliation

Department of Genome Sciences, University of Washington, Seattle (3)
Harvard Medical School, Boston, USA Instituto de Investigación Sanitaria del Principado de Asturias (ISPA), Oviedo, Spain (1)

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Multiple pathways for glucose phosphate transport and utilization support growth of Cryptosporidium parvum.

Not available

S-EPMC10774378 | biostudies-literature

Economic evaluation alongside the Probiotics to Prevent Severe Pneumonia and Endotracheal Colonization Trial (E-PROSPECT): study protocol.

Not available

S-EPMC7322334 | biostudies-literature

Expression Profiling Identifies Novel Gene Targets and Functions for Pdx1 in the Duodenum of Mature Mice

Transcription factor pancreatic and duodenal homeobox 1 (Pdx1) plays an essential role in the pancreas to regulate its development and maintain proper islet function. However, less is known about the function of Pdx1 in the small intestine. We aim to investigate the role of Pdx1 in mature proximal s...

ORGANISM(S): Mus musculus

2012-01-12 | E-GEOD-29048 | biostudies-arrayexpress

PTBP1 - Modified iCLIP

This experiments was performed in HeLa cells according to the iCLIP protocol with the following modifications: no antiRNase was used and the concentration of RNase I was 0.5 U/ml. In iCLIP4, the dephosphorylation step was omitted from the standard protocol. The rest of the protocol was identical to...

ORGANISM(S): Homo sapiens

2016-11-24 | E-MTAB-5026 | biostudies-arrayexpress

Virulence differences in Toxoplasma mediated by amplification of polymorphic pseudokinases.

The population structure of Toxoplasma gondii includes three highly prevalent clonal lineages, types I, II, and III, which differ greatly in virulence in the mouse model. Previous studies have implicated a family of serine threonine protein kinases found in rhoptries (ROPs) as important in mediatin...

ORGANISM(S): Toxoplasma gondii

2011-05-03 | E-GEOD-24905 | biostudies-arrayexpress

Toxoplasma gondii effector TgIST blocks type I interferon signaling to promote infection.

Not available

S-EPMC6717281 | biostudies-literature

A cell engineering approach to enzyme-based fed-batch fermentation.

Not available

S-EPMC8310608 | biostudies-literature

Dynamics of an optically confined nanoparticle diffusing normal to a surface.

Not available

S-EPMC5970563 | biostudies-literature

Genome-wide identification of bHLH transcription factors: Discovery of a candidate regulator related to flavonoid biosynthesis in Erigeron breviscapus.