Silva De Silva D D

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Unknown (5784)
Proteomics (102)
Transcriptomics (99)
Metabolomics (23)
Genomics (17)
Other (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (92)
Homo sapiens (48)
Mus musculus (27)
Pseudomonas putida (4)
Saccharomyces cerevisiae (4)
Solanum tuberosum subsp. andigenum (2)
Ectocarpus siliculosus (2)
Trypanosoma cruzi (2)
Vibrio cholerae (2)
Candida albicans (2)
Arabidopsis thaliana (2)
Leptobalanus humilis (2)
Enterococcus faecalis V583 (1)
Populus trichocarpa x Populus deltoides (1)
Plasmodium yoelii (1)
Daphnia magna (1)
Aspergillus fumigatus (1)
Zea mays (1)
Oryza sativa (1)
Paracoccidioides brasiliensis (1)
Aedes aegypti (1)
Bos taurus (1)
Pseudomonas putida KT2440 (1)
Escherichia coli K-12 (1)
Cryptococcus neoformans (1)
Gallus gallus (1)
Rattus norvegicus (1)
Danio rerio (1)
cellular organisms (1)
Oncorhynchus mykiss (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (102)
pride (92)
MetaboLights (21)
EGA (10)
MassIVE (10)
ENA (4)
GNPS (2)
jPOST (1)
PanoramaPublic (1)

Tissue

Cell culture (20)
Plant cell (8)
Brain (7)
Blood plasma (6)
Epithelial cell (5)
Fibroblast (5)
Liver (5)
B cell (4)
Blood serum (4)
Blood cell (3)
Bone marrow (3)
Leaf (3)
Lung (3)
Stem cell (3)
Venom (3)
HeLa cell (2)
Kidney (2)
Monocyte (2)
Neuroblastoma cell line (2)
Root (2)
Skeletal muscle (2)
Skin (2)
Venom gland (2)
Abdominal adipose tissue (1)
Bile (1)
Bile duct (1)
Blood (1)
Blood platelet (1)
Blood-lymph (1)
Bone marrow cell (1)

Disease

COVID-19 (5)
Neuroblastoma (4)
Disease free (3)
Brain cancer (2)
Gray platelet syndrome (2)
Lymphoma (2)
Multiple myeloma (2)
Schizophrenia (2)
Stomach cancer (2)
Type 2 diabetes mellitus (2)
N/a (1)
Acute leukemia (1)
B-cell lymphoma (1)
Becker muscular dystrophy (1)
Breast cancer (1)
Cancer (1)
Chikungunya (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Colon cancer (1)
Developmental and epileptic encephalopathy 9 (1)
Duchenne muscular dystrophy (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Frontotemporal dementia (1)
Head and neck cancer (1)
Idiopathic pulmonary fibrosis (1)
Lung cancer (1)
Lung carcinoma (1)

Technology Type

Mass Spectrometry (92)
Shotgun proteomics (59)
Mass spectrometry (16)
HDMSE (13)
Bottom-up proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (7)
SWATH MS (7)
Gel-based experiment (6)
NMR spectroscopy (4)
Data-dependent acquisition (4)
Data-independent acquisition (3)
Mass spectrometry assay (2)
All-ion fragmentation (2)
Affymetrix/Illumina (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
MSE (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Illumina NovaSeq 6000 (5)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina HiSeq 2000 (3)
NextSeq 500 (3)
Scanning hardware (2)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
6520A Quadrupole Time-of-Flight LC/MS (2)
6560 Q-TOF LC/MS (2)
LTQ Orbitrap Elite (2)
Varian (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Nuclear Magnetic Resonance (NMR) - (2)
Liquid Chromatography MS - positive (2)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Microcentrifuge (1)
MouseWG-6_V2_0_R3_11278593_A (1)
Gene Titan (1)
AB SOLiD System 3.0 (1)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
LTQ Orbitrap XL ETD (1)
LTQ XL (1)
MaXis (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
Gas Chromatography MS - negative - medium-polarity (1)

Publication Date

2022 (22)
2021 (19)
2023 (18)
2025 (16)
2015 (16)
2020 (15)
2026 (14)
2024 (14)
2013 (13)
2016 (12)
2010 (10)
2019 (9)
2012 (9)
2014 (8)
2018 (7)
2017 (6)
2011 (6)
2008 (6)
2009 (3)
2007 (2)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:16737 (6)
CHEBI:16919 (5)
CHEBI:15741 (5)
CHEBI:17154 (5)
CHEBI:15366 (4)
CHEBI:16449 (4)
CHEBI:16704 (4)
CHEBI:17895 (4)
CHEBI:17596 (4)
CHEBI:17202 (4)
CHEBI:15891 (4)
CHEBI:17754 (4)
CHEBI:15354 (4)
CHEBI:16958 (4)
CHEBI:16027 (4)
CHEBI:27266 (3)
CHEBI:26986 (3)
CHEBI:26271 (3)
CHEBI:28044 (3)
CHEBI:24898 (3)
CHEBI:22653 (3)
CHEBI:422 (3)
CHEBI:15428 (3)
CHEBI:17858 (3)
CHEBI:17295 (3)
CHEBI:17368 (3)
CHEBI:16235 (3)
CHEBI:18211 (3)
CHEBI:30769 (3)
CHEBI:17750 (3)

Metabolite Name

Creatinine (5)
Creatine (4)
Niacinamide (3)
Cholic acid (3)
L-Proline (3)
L-Leucine (3)
Choline (3)
L-Phenylalanine (3)
Deoxyuridine (2)
5'-Methylthioadenosine (2)
Lactate (2)
Tris(2-butoxyethyl) phosphate (2)
Creatine (2)
Spermidine (2)
L-Alanine (2)
Glycerol (2)
Glutathione (2)
Cytosine (2)
L-Histidine (2)
Taurine (2)
L-Threonine (2)
Adenosine (2)
Succinate (2)
L-Isoleucine (2)
L-Glutamine (2)
Glucose (2)
L-Valine (2)
L-Tyrosine (2)
L-Arginine (2)
Inosine (2)

First Public Date

2025 (2)
2020 (2)

Study type

Transcription profiling by array (71)
RNA-seq of coding RNA (9)
RNA-seq of coding RNA from single cells (3)
RNA-seq of non coding RNA (3)
Transcription profiling by tiling array (2)
Ribo-seq (2)
Transcription profiling by SAGE (1)
Cell line - One-color microarray (1)
Spatial transcriptomics by high-throughput sequencing (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
RIP-seq (1)
Single nucleus RNA sequencing (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (783)
2025 (727)
2021 (715)
2023 (702)
2024 (614)
2020 (461)
2019 (356)
2018 (300)
2017 (258)
2016 (195)
2015 (173)
2014 (130)
2026 (118)
2013 (97)
2012 (72)
2011 (52)
2010 (40)
2008 (28)
2009 (27)
2007 (8)
2006 (7)
2003 (7)
2004 (5)
2005 (3)
2002 (3)
2001 (3)
2000 (1)
1999 (1)

Lab affiliation

Federal University of Uberlandia (3)
Departamento de Bioquimica, Escola Paulista de Medicina, UniversidadeFederal de Sao Paulo, SP, Brazil (2)
Department of Cell Biology, Center of Research and Advanced Studies of the National Polytechnic Institute (CINVESTAV-IPN), Av. Instituto Politécnico Nacional 2508, CP 07360 Ciudad de México (CDMX), México. Tel.: +52 55 5747 3354 (2)
Laboratório de Toxinologia Aplicada Center of Toxins, Immune-Response and Cell Signaling (CeTICS) Instituto Butantan Av. Vital Brasil 1500 05503-000 São Paulo-SP Brazil Phones: (55 11) 2627-9731; 2627-9732 (2)
Unidade Proteômica, Departamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro; Laboratório de Proteômica (LabProt), LADETEC, Instituto de Química, Universidade Federal do Rio de Janeiro; Centro de Pesquisa em Medicina de Precisão, Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro (2)
1. Laboratório de Neurofisiologia, Departamento de Ciências Fisiológicas, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro (UERJ), Av. Prof. Manuel de Abreu 444, 5 andar – Vila Isabel, Rio de Janeiro, RJ, 20550-170, Brazil. (1)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
Animal Cell Technology Unit, iBET - Instituto de Biologia Experimental e Tecnológica (1)
Animal Science Institute (1)
Associate professor at University of Campinas-SP (UNICAMP-SP) (1)
Biozentrum, University of Basel, CH-4056 Basel, Switzerland (1)
Butantan Institute (1)
CCMAR (Center of Marine Sciences), Universidade do Algarve,Campus de Gambelas, Portugal (1)
CCMAR (Center of Marine Sciences, Universidade do Algarve,Campus de Gambelas, Portugal (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Centre of Excellence in New Target Discovery (CENTD), Butantan Institute, Sao Paulo, Brazil. (1)
Centro de Análises Proteômicas e Bioquímicas, Universidade Católica de Brasília, Brasília, Brazil. S-Inova Biotech, Programa de Pós-Graduação em Biotecnologia, Universidade Católica Dom Bosco, Campo Grande, Brazil. (1)
Clinical Proteomics Facility Medical Biochemistry Academic Medical Center, University of Amsterdam (1)
College of Veterinary Medicine and Animal Science, University of São Paulo, Pirassununga, SP, Brazil. (1)
Computational Mass Spectrometry & Proteomics Group Carlos Chagas Institute, Fiocruz - PR Brazil (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal E-mail: rune.matthiesen@nms.unl.pt | www.nms.unl.pt (1)
Coordenadora do laboratório de espectrometria de massas, LNBio, CNPEM, Brasil. (1)
DZNE Munich / TU Munich (1)
DZNE Munich / TUM Munich (1)
Departamento de Fisiologia e Biofísica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil. (1)
Department of Biochemistry, Escola Paulista de Medicina, Federal University of São Paulo, (EPM/UNIFESP), São Paulo, SP, Brazil. (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Functional and Molecular Biology, Institute of Biology, State University of Campinas (UNICAMP), Brazil (1)
Department of Medical Sciences and Institute of Biomedicine - iBiMED, University of Aveiro, 3810-193 Aveiro, Portugal (1)

6027 Results

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