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TranscriptomicsSynthetic circuit identifies subpopulations with sustained memory of DNA damage
Differential responses to stimuli can affect how cells succumb to disease. In yeast, DNA damage can create heterogeneous responses. To delineate how a response contributes to a cell's future behavior, we constructed a transcription-based memory circuit that detects DNA repair to isolate subpopulatio...
ORGANISM(S): Saccharomyces cerevisiae 
2012-03-02 | E-GEOD-36210 | biostudies-arrayexpress
TranscriptomicszzYra1 co-IPed RNA vs. Total RNA (zzYra1IP_v_TotalRNA)
Comparison of cDNA from RNA IPed with zzYra1 to that from total RNA; resulting analysis gives Yra1 binding level relative to total abundance for each mRNA
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-27 | E-GEOD-101 | biostudies-arrayexpress
TranscriptomicszzMex67 co-IPed RNA vs. Total RNA (zzMex67IP_v_TotalRNA)
Comparison of cDNA from RNA IPed with zzMex67 to that from total RNA; resulting analysis gives Mex67 binding level relative to total abundance for each mRNA
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-27 | E-GEOD-100 | biostudies-arrayexpress
TranscriptomicszzYra1 co-IPed RNA vs. zzMex67 co-IPed RNA (zzYra1IP_v_zzMex67IP)
Comparison of cDNA from RNA co-IPed with zzYra1 to cDNA from RNA co-IPed with zzMex67
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-27 | E-GEOD-102 | biostudies-arrayexpress
Transcriptomicstotal RNA from mex67-6 at 37C vs. Mex67 WT at 37C (mex67-5TS_v_Mex67WT)
Comparison of cDNA from RNA of mex67-5 temperature-sensitive mutant to RNA from Mex67 wildtype strain both at the non-permissive temperature of 37C
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-27 | E-GEOD-103 | biostudies-arrayexpress
Transcriptomicstotal RNA from yra1-1 at 37C vs. Yra1 WT at 37C (yra1-1TS_v_Yra1WT)
Comparison of cDNA from RNA of yra1-1 temperature-sensitive mutant to RNA from Yra1 wildtype strain both at the non-permissive temperature of 37C
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-27 | E-GEOD-104 | biostudies-arrayexpress
TranscriptomicszzYra1 co-IPed RNA vs. zz co-IPed RNA (zzYra1IP_v_zzIP)
Comparison of cDNA from RNA IPed with zzYra1 to that from RNA co-IPed with zz tag alone (control IP)
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-27 | E-GEOD-99 | biostudies-arrayexpress
TranscriptomicszzMex67 co-IPed RNA vs. zz co-IPed RNA (zzMex67IP_v_zzIP)
Comparison of cDNA from RNA IPed with zzMex67 to that from RNA co-IPed with zz tag alone (control IP)
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-27 | E-GEOD-98 | biostudies-arrayexpress
TranscriptomicsGLA and profiling of proteasome, Spt23 and Mga2
The proteasome can regulate transcription through proteolytic processing of transcription factors and via gene locus binding, but few targets of proteasomal regulation have been identified. Using genome-wide location analysis and transcriptional profiling in Saccharomyces cerevisiae, we have establ...
ORGANISM(S): Saccharomyces cerevisiae 
2006-02-28 | E-GEOD-4272 | biostudies-arrayexpress
TranscriptomicsENCODE: two phosphorylation states of RNAP II ChIP-chip from HeLa cells
Two phosphorylation states of RNAPII in HeLa cells Keywords: ChIP-chip Study of RNAPII binding patterns to ENCODE regions. 3 arrays using 8wg16 antibody, hypophosphoryated PolII, 3 arrays using 4H8 antibody, phosphorylated PolII CTD, and 6 input DNA arrays.
ORGANISM(S): Homo sapiens 
2010-06-10 | E-GEOD-2735 | biostudies-arrayexpress
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