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TranscriptomicsThe dependency of cpr5-altered genes on SIM and SMR1 in Arabidopsis
In plants, effector-triggered immunity (ETI) is often associated with programmed cell death (PCD). Although the intracellular immune receptors involved in ETI have been studied extensively, how their activation leads to PCD and disease resistance is poorly understood. We found that the Arabidopsis n...
ORGANISM(S): Arabidopsis thaliana 
2012-12-31 | E-GEOD-40322 | biostudies-arrayexpress
GenomicsSIM community
Effects of different diets on SIM community
PRJEB22735 | ENA
GenomicsDrosophila melanogaster strain:SIM
Drosophila melanogaster strain:SIM Variation
PRJNA257179 | ENA
ProteomicsSIM-XL: a powerful and user-friendly tool for peptide cross-linking analysis
Chemical cross-linking has emerged as a powerful approach for the structural characterization of proteins and protein complexes. However, the correct identification of covalently linked (cross-linked) peptides analyzed by tandem mass spectrometry is still an open challenge. Here we present SIM-XL, a...
ORGANISM(S): Homo sapiens (Human) 
2015-02-02 | PXD001677 | Pride
Cross-linked peptides Search engine Cross-linking 
ProteomicsScreening for covalent SUMOylation and noncovalent SUMO interactions with SIM-binding groove SUMO mutants
Small ubiquitin-like modifier (SUMO) proteins affect protein function through both covalent modification of target proteins and noncovalent protein-protein interactions. The best characterized mode of SUMO interaction involves binding of a SUMO-interaction motif (SIM) to a conserved binding groove i...
ORGANISM(S): Homo sapiens (Human) 
2025-04-03 | PXD050651 | Pride
Sumo Protein interactions Sim 
TranscriptomicsTranscription profiling of Arabidopsis gl3-sst sim trichomes
Transcriptional profiling of isolated gl3-sst sim trichomes.
ORGANISM(S): Arabidopsis thaliana 
2009-02-04 | E-MEXP-2013 | biostudies-arrayexpress
MetabolomicsGC-MS Based Plasma Metabolomics for Identification of Candidate Biomarkers for Hepatocellular Carcinoma in Egyptian Cohort
This study evaluates changes in metabolite levels in hepatocellular carcinoma (HCC) cases vs. patients with liver cirrhosis by analysis of human blood plasma using gas chromatography coupled with mass spectrometry (GC-MS). Untargeted metabolomic analysis of plasma samples from participants recruited...
2015-08-13 | MTBLS105 | MetaboLights
GenomicsMycobacterium simiae strain:JAL-560-SIM
Mycobacterium simiae strain:JAL-560-SIM Genome sequencing and assembly
PRJNA563350 | ENA
UnknownInterdependence of First-coil and Global volume embolization ratios (VERs) calculated by Sim&Size in predicting aneurysm occlusion outcomes.
Not available
S-EPMC12095266 | biostudies-literature
GenomicsTranscriptomic response of SIM-A9 microglia to neuro-probes
Transcriptomic response of SIM-A9 microglia to neuro-probes
PRJNA642407 | ENA
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