Simon Thomas T - OmicsDI

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Unknown (421)
Genomics (77)
Transcriptomics (19)
Metabolomics (10)
Proteomics (8)

Organisms

Homo sapiens (93)
Mus musculus (5)
Thalassiosira pseudonana CCMP1335 (1)
Rattus norvegicus (1)
Bos taurus (1)
Alteromonas macleodii (1)

Repository

EGA (77)
biostudies-arrayexpress (19)
MetaboLights (10)
pride (5)
MassIVE (2)
PanoramaPublic (1)

Tissue

Cell culture (1)
HEK-293T cell (1)
Palate (1)
Permanent cell line cell (1)
Skin (1)
Tongue (1)
Tonsil (1)

Disease

Melanoma (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Glioblastoma (1)
Head and neck squamous cell carcinoma (1)

Technology Type

Mass spectrometry (10)
Illumina 15K (8)
Mass Spectrometry (5)
Affinity purification coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina 450K, Bisulfite-Seq (1)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina HumanCNV370, Illumina HumanHap 300 v2 Duo, Taqman and sequencing, Illumina Human660W-Quad (1)
Illumina OncoArray (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Data-independent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2500 (2)
Liquid Chromatography MS - negative - direct infusion (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Velos (1)
MaXis (1)
Q Exactive (1)
Diode array detection MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2021 (8)
2013 (4)
2014 (3)
2024 (2)
2018 (2)
2017 (2)
2016 (2)
2012 (2)
2011 (2)
2023 (2)
2026 (1)
2020 (1)
2015 (1)
2007 (1)
2025 (1)
2022 (1)
2019 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:15603 (3)
CHEBI:15727 (3)
CHEBI:15891 (3)
CHEBI:16335 (3)
CHEBI:16467 (3)
CHEBI:16610 (3)
CHEBI:16742 (3)
CHEBI:16750 (3)
CHEBI:17148 (3)
CHEBI:17196 (3)
CHEBI:17239 (3)
CHEBI:17295 (3)
CHEBI:17509 (3)
CHEBI:17596 (3)
CHEBI:17659 (3)
CHEBI:17895 (3)
CHEBI:18066 (3)
CHEBI:30797 (3)
CHEBI:32816 (3)
CHEBI:15414 (2)
CHEBI:15422 (2)
CHEBI:15721 (2)
CHEBI:15729 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:15971 (2)
CHEBI:15978 (2)
CHEBI:15996 (2)
CHEBI:16015 (2)

Metabolite Name

Accurate mass (2)
NADPH (2)
Taurine (2)
(+)-Neomenthol (1)
(-)-Medicocarpin (1)
(10S)-Juvenile hormone III acid diol (1)
(10S)-Juvenile hormone III diol (1)
(1R)-Hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene (1)
(1R,2S)-Naphthalene 1,2-oxide (1)
(2-Naphthyl)methanol (1)
(22R,23R)-22,23-Dihydroxy-campest-4-en-3-one (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(2S,3S)-3-Methylphenylalanine (1)
(3R,2'S)-Myxol 2'-alpha-L-fucoside (1)
(3S,2'S)-4-Ketomyxol 2'-alpha-L-fucoside (1)
(4E)-2-Oxohexenoic acid (1)
(9Z)-Hexadecenoic acid (1)
(9Z)-Octadecenoic acid (1)
(Indol-3-yl)acetamide (1)
(R)-(Homo)2-citrate (1)
(R)-10-Hydroxystearate (1)
(R)-Mandelamide (1)
(R)-Mandelate (1)
(S)-DNPA (1)
(S)-Malate (1)
(Z)-3-Hexen-1-ol acetate (1)
(Z)-3-Peroxyaminoacrylate (1)
1,1'-Dihydroxy-1,1',2,2'-tetrahydrolycopene (1)
1,2-Dihydronaphthalene-1,2-diol (1)
1,2-Dihydroxy-8-methylnaphthalene (1)

Study type

Transcription profiling by array (10)
RNA-seq of coding RNA (5)
Methylation profiling by array (2)
Other (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (56)
2018 (53)
2021 (50)
2024 (42)
2020 (35)
2025 (28)
2015 (25)
2023 (24)
2017 (21)
2014 (16)
2019 (16)
2013 (15)
2016 (11)
2026 (10)
2012 (10)
2011 (10)
2009 (7)
2010 (5)
2007 (3)
2008 (2)
2002 (1)

Lab affiliation

Department of Biology University of Rochester Rochester, NY , USA (1)
Department of Otorhinolaryngology and Head & Neck Surgery, University Medical Center Ulm, Head and Neck Cancer Center of the Comprehensive Cancer Center Ulm, Ulm, Germany (1)
Giamas Lab School of Life Sciences University of Sussex (1)
Institute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, University of Freiburg, Freiburg 79104, Germany CIBSS - Centre for Integrative Biological Signalling Studies, University of Freiburg, Freiburg 79104, Germany (1)
Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (1)

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The expanded regulatory T cell population in chronic filarial infection is highly heterogeneous, activated and suppresses dendritic cell function indirectly through effector T cells.

Natural regulatory T cells (nTregs) are known to increase during chronic infection or at the site tumor, though the exact mechanisms that contribute to their accumulation and mode of action remain unclear. We used flow cytometry and microarray analyses to delineate the phenotype of nTregs and their ...

ORGANISM(S): Homo sapiens

2016-02-25 | E-GEOD-44767 | biostudies-arrayexpress

BLUEPRINT DNA methylation profiles of monocytes, T cells and B cells in type 1 diabetes-discordant monozygotic twins

EGAS00001001598 | EGA

Subdominant CD8 T-cell epitopes account for protection against cytomegalovirus independent of immunodomination.

Not available

S-EPMC2395166 | biostudies-literature

A proportion of CD4+ T cells from patients with chronic Chagas disease undergo a dysfunctional process, which is partially reversed by benznidazole treatment.

Not available

S-EPMC7888659 | biostudies-literature

Low-Fat Dietary Pattern and Breast Cancer Mortality in the Women's Health Initiative Randomized Controlled Trial.

Not available

S-EPMC5578391 | biostudies-literature

JAML immunotherapy targets recently activated tumor-infiltrating CD8⁺ T cells.

Not available

S-EPMC10366340 | biostudies-literature

Microarray for hepatitis B virus genotyping and detection of 994 mutations along the genome.

Not available

S-EPMC3020862 | biostudies-literature

Combining genotypes and T cell receptor distributions to infer genetic loci determining V(D)J recombination probabilities.

Not available

S-EPMC8940181 | biostudies-literature

Administration of broadly neutralizing anti-HIV-1 antibodies at ART initiation maintains long-term CD8⁺ T cell immunity.

Not available

S-EPMC9617872 | biostudies-literature

Cell-derived extracellular vesicles can be used as a biomarker reservoir for glioblastoma tumor subtyping

Glioblastoma (GBM) is one of the most aggressive solid tumors for which treatment options and biomarkers are limited. Small extracellular vesicles (sEVs) produced by both GBM and stromal cells are central in the inter-cellular communication that is taking place in the tumor bulk. As tumor sEVs are a...

ORGANISM(S): Homo sapiens (Human)

2019-08-08 | PXD014579 | Pride

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