Sinha M M - OmicsDI

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Unknown (2041)
Transcriptomics (67)
Proteomics (60)
Genomics (18)
Metabolomics (6)
Models (1)

Organisms

Mycobacterium tuberculosis SP7 (47)
Mycobacterium tuberculosis SP10 (47)
Mycobacterium tuberculosis SP13 (47)
Mycobacterium tuberculosis SP22 (47)
Chlamydomonas reinhardtii (47)
Enterococcus mundtii CRL35 (47)
Oncorhynchus tshawytscha (47)
Pseudomonas canadensis (47)
Human alphaherpesvirus 1 strain 17 (47)
Mycobacterium tuberculosis SP1 (47)
Marchantia polymorpha subsp. ruderalis (47)
Methylocystis sp. (47)
Exiguobacterium sp. SH31 (47)
Homo sapiens (37)
Mus musculus (26)
Apis mellifera (6)
Glycine max (4)
Polistes metricus (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Apis mellifera ligustica (1)
Catharanthus roseus (1)
Gasterosteus aculeatus (1)
synthetic construct (1)
Actinobacillus pleuropneumoniae (1)
Schizosaccharomyces pombe (1)
Streptococcus pneumoniae (1)
Apis mellifera mellifera (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
Sus scrofa (1)

Repository

biostudies-arrayexpress (82)
pride (47)
MassIVE (11)
MetaboLights (5)
EGA (3)
BioModels (1)
GNPS (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Blood cell (6)
Permanent cell line cell (5)
Cell culture (5)
Seed (3)
Blood (3)
Skin (2)
Bone marrow (2)
Stem cell (2)
T cell (2)
Gland (1)
Lymph gland crystal cell (1)
Homo sapiens protein (1)
Granulocyte monocyte progenitor cell (1)
Megakaryocyte-erythroid progenitor cell (1)
Common lymphoid progenitor (1)
Hematopoietic multipotent progenitor cell (1)
Common myeloid progenitor (1)
Hematopoietic stem cell (1)
T-lymphocyte (1)
Retinal pigment epithelial cell (1)
Fungal cell (1)
Embryonic fibroblast (1)
Retinal pigment epithelium cell (1)
Sperm (1)
MDA-MB-231 cell (1)
Pancreas (1)
Adrenal gland (1)
Flower bud (1)
Keratinocyte (1)
Extracellular vesicle (1)

Disease

Disease free (4)
Plasmodium falciparum malaria (2)
COVID-19 (2)
Breast cancer (2)
Multiple myeloma (1)
Squamous cell carcinoma of the skin (1)
Azoospermia (1)
Oligoasthenoteratozoospermia (1)
Age related macular degeneration (1)
Melanoma (1)
Pulmonary tuberculosis (1)
Skin squamous cell carcinoma (1)
Myeloproliferative neoplasm (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (47)
Shotgun proteomics (31)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Mass spectrometry (4)
SWATH MS (3)
Gel-based experiment (3)
Data-dependent acquisition (3)
NMR spectroscopy (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (7)
Orbitrap Fusion Lumos (5)
NextSeq 500 (3)
Q Exactive (3)
Q Exactive Plus (2)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
GeneChip 3000 7G (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
Impact II (1)
Thermo Fischer-Orbitrap Fusion Tribrid (1)
TSQ Quantiva (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Liquid Chromatography MS - - - Q Exactive (1)
Bruker (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2020 (16)
2012 (14)
2021 (12)
2013 (12)
2016 (10)
2014 (10)
2010 (9)
2023 (9)
2025 (8)
2017 (7)
2026 (6)
2011 (6)
2015 (5)
2008 (5)
2009 (4)
2022 (4)
2024 (4)
2019 (3)
2007 (2)
2018 (2)
2005 (1)

CHEBI ID

CHEBI:25094 (3)
CHEBI:18237 (3)
CHEBI:17234 (3)
CHEBI:16449 (3)
CHEBI:16737 (3)
CHEBI:74767 (2)
CHEBI:83501 (2)
CHEBI:37946 (2)
CHEBI:176478 (2)
CHEBI:176456 (2)
CHEBI:1606 (2)
CHEBI:2869 (2)
CHEBI:8087 (2)
CHEBI:90344 (2)
CHEBI:133532 (2)
CHEBI:68505 (2)
CHEBI:133185 (2)
CHEBI:133435 (2)
CHEBI:133066 (2)
CHEBI:133005 (2)
CHEBI:82942 (2)
CHEBI:133186 (2)
CHEBI:68447 (2)
CHEBI:28997 (2)
CHEBI:71182 (2)
CHEBI:71018 (2)
CHEBI:68449 (2)
CHEBI:84842 (2)
CHEBI:87986 (2)
CHEBI:46215 (2)

Metabolite Name

Lysine (2)
Glutamate (2)
Glucose (2)
Pyruvate (2)
Alanine (2)
Lactate (2)
Creatinine (2)
N,N,N-Trimethyl-L-alanyl-L-proline betaine (TMAP) (1)
4-quinolinecarboxylic acid (1)
N-acetyl glycoprotein (1)
Lipids (1)
Dimethylarginine; LC-tDDA; CE10 (1)
Ne,Ne-Dimethyl-lysine (1)
Tricarballylic acid (1)
Protocatechiuc acid 4-O-sulfate (1)
N2-Succinylglutamic acid (1)
5-Carboxy-2-deoxyuridine (1)
Methylgallic O-sulfate (1)
Dihydromaleimide beta-glucoside (1)
4-O-alpha-Galactopyranuronosyl-galacturonic acid (1)
3-hydroxy-3-(3-hydroxyphenyl)propanoic acid O-sulphate (1)
Cysteinosuccinic acid (1)
Galactose 6-sulfate (1)
3-Sulfooxybutanoic acid (1)
Glucose 6-sulfate (1)
Glycerophosphorylethanolamine (1)
4-Hydroxy-5-(dihydroxyphenyl)valeric acid O-sulphate (1)
Succinylserine (1)
3-O-sulfo-beta-galactose (1)
Sinapinic acid-O-sulfate (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (44)
ChIP-seq (12)
RNA-seq of coding RNA (10)
Methylation profiling by array (7)
Human - High-throughput sequencing (2)
DNA-seq (2)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
Other (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (243)
2021 (239)
2023 (235)
2025 (201)
2024 (195)
2020 (158)
2019 (139)
2018 (115)
2016 (107)
2017 (96)
2015 (69)
2014 (64)
2013 (58)
2012 (45)
2011 (40)
2026 (30)
2010 (30)
2008 (19)
2009 (17)
2007 (12)
2004 (3)
2006 (2)
2005 (2)
2002 (2)
2003 (1)
1998 (1)

Lab affiliation

National Institute of Plant Genome Research, JNU Campus, Aruna Asaf Ali Marg, New Delhi-110067, India (3)
Department of Comparative Biology and Experimental Medicine, Faculty of Veterinary Medicine, University of Calgary; Hotchkiss Brain Institute, University of Calgary; Alberta Children’s Hospital Research Institute, University of Calgary (1)
University of Pittsburgh School of Medicine, Ophthalmology department (1)
Institute of Bioinformatics, International Technology Park, Bangalore 560066 (1)
Biological Engineering, CEHS, MIT (1)
Center for Addiction Research Department of Pharmacology and Toxicology The University of Texas Medical Branch Galveston, TX 77555 (1)
Department of Biochemistry, University of Calcutta (1)
Experimental Systems Immunology Laboratory, Max-Planck Institute of Biochemistry, Martinsried, Germany. (1)
Professor, Medicine and Cellular and Molecular Medicine Founding Director, Institute for Network Medicine University of California San Diego (1)
Scientific Officer-G Advanced Centre for Treatment, Research and Education in Cancer, Tata Memorial Centre, Navi Mumbai-410210, India (1)
The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark (1)
Scientific Officer-G Advanced Centre for Treatment, Research and Education in Cancer, Tata Memorial Centre, Navi Mumbai-410210, India (1)
Director (1)
Quantitative Biosciences Institute (QBI), J. David Gladstone Institutes, Department of Cellular and Molecular Pharmacology, University of California, San Francisco (1)
Experimental Systems Immunology, Max-Planck Institute of Biochemistry, Martinsried, Germany (1)
Department of Proteomics and Signal Transduction; Max-Planck Institute of Biochemistry; Martinsried, Bavaria, 82152; Germany (1)
Howard Hughes Medical Institute Department of Molecular Biology and Genetics, Johns Hopkins Medical Institute 725 N. Wolfe Street 714 PCTB Baltimore, MD 21205 410-614-4928 (1)
The University of Queensland Diamantina Institute, University of Queensland, Translational Research Institute, Brisbane QLD 4102, Australia and QIMR Berghofer Medical Research Institute, Brisbane QLD 4006, Australia (1)
Howard Hughes Medical Institute and Department of Molecular Biology and Genetics, Johns Hopkins Medical Institute, 725 N. Wolfe Street 714 PCTB Baltimore, MD 21205 410-614-4928 (1)
1. Proteomics Facility, Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, the Netherlands; 2. Biomolecular Mass Spectrometry and Proteomics, Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH, Utrecht, the Netherlands (1)
STANFORD INSTITUTE FOR STEM CELL BIOLOGY AND REGENERATIVE MEDICINE, Stanford University, Stanford, CA, USA (1)
Bradley Distinguished Professor Chair of Cancer Biology & Research Professor of Cell Biology Centre for Cancer Biology University of South Australia (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (lab head) (1)
QIMR Berghofer Medical Research Institute, 300 Herston Road, Herston, Brisbane QLD 4006, Australia (1)
Center of Neurogenomics and Cognitive Research (CNCR), Department of Molecular and Cellular Neurobiology, Vrije Universiteit, Amsterdam, Netherlands (1)
Associate Professor & Co-Chair, Biology Division Indian Institute of Science Education and Research (IISER Pune) Dr. Homi Bhabha Road, Pashan, Pune-411008. Maharashtra, India. (1)
CSIR-CCMB (1)
Institute of Bioinformatics, Discoverer Building, 7th Floor, International Tech Park, Whitefield, Bangalore - 560 066, Karnataka, India. (1)
Head of the Curie Institute's mass spectrometry platform (LSMP) (1)
Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada (1)

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Maternal exposure to SSRIs or SNRIs and the risk of congenital abnormalities in offspring: A systematic review and meta-analysis.

Not available

S-EPMC10686472 | biostudies-literature

S-cone photoreceptors in the primate retina are functionally distinct from L and M cones.

Not available

S-EPMC6344076 | biostudies-literature

The epigenetic signature of subcutaneous fat cells is linked to altered expression of genes implicated in lipid metabolism in obese women

Background Obesity is associated with changes in fat cell gene expression and metabolism. What drives these changes is not well understood. We aimed to explore fat cell epigenetics, i.e., DNA methylation, as one mediator of gene regulation, in obese women. The global DNA methylome for abdominal subc...

ORGANISM(S): Homo sapiens

2015-09-15 | E-GEOD-67024 | biostudies-arrayexpress

A Comparison of Time Delay in Three Continuous Glucose Monitors for Adolescents and Adults.

Not available

S-EPMC5951038 | biostudies-literature

Inference of the haplotype effect in a matched case-control study using unphased genotype data.

Not available

S-EPMC2835450 | biostudies-literature

Local M-CSF (Macrophage Colony-Stimulating Factor) Expression Regulates Macrophage Proliferation and Apoptosis in Atherosclerosis.

Not available

S-EPMC7769919 | biostudies-literature

Detection of Beijing strains of MDR M. tuberculosis and their association with drug resistance mutations in katG, rpoB, and embB genes.

Not available

S-EPMC7557036 | biostudies-literature

New benzisoxazole derivative: A potential corrosion inhibitor for mild steel in 0.5 M hydrochloric acid medium -insights from electrochemical and density functional theory studies.

Not available

S-EPMC10616339 | biostudies-literature

Macrophomina phaseolina Secretome LC-ESI-MS-MS

Macrophomina phaseolina is a global devastating necrotrophic fungal pathogen. It causes charcoal rot disease in more than 500 host plants. It is essential to understand the host microbe interaction and the diseases pathogenesis which can ensure global agricultural crop production and security. An ar...

ORGANISM(S): Macrophomina phaseolina MS6

2022-05-20 | PXD032749 | Pride

Reducing insulin via conditional partial gene ablation in adults reverses diet-induced weight gain.

Not available

S-EPMC5892722 | biostudies-literature

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2193 Results

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