Sinha S S - OmicsDI

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Unknown (2861)
Transcriptomics (82)
Proteomics (57)
Genomics (24)
Metabolomics (8)

Organisms

Andropogon gerardi (49)
Bacteria (49)
Bartonella quintana JK 31 (49)
Canis lupus familiaris (49)
Clavibacter nebraskensis NCPPB 2581 (49)
Cnidaria (49)
Ensifer adhaerens (49)
Human alphaherpesvirus 1 strain 17 (49)
Human alphaherpesvirus 1 strain KOS (49)
Human betaherpesvirus 5 (49)
Homo sapiens (35)
Mus musculus (32)
Apis mellifera (7)
Glycine max (4)
Pristionchus pacificus (3)
Polistes metricus (3)
Taeniopygia guttata (2)
Caenorhabditis elegans (2)
Sus scrofa (2)
Apis mellifera ligustica (1)
Gasterosteus aculeatus (1)
Plasmodium berghei (1)
synthetic construct (1)
Actinobacillus pleuropneumoniae (1)
Schizosaccharomyces pombe (1)
Streptococcus pneumoniae (1)
Apis mellifera mellifera (1)
Solanum lycopersicum (1)
Escherichia coli (1)
Candida albicans (1)

Organisms

Escherichia coli (2)
Schizosaccharomyces pombe (1)

Repository

biostudies-arrayexpress (92)
pride (49)
EGA (7)
ENA (7)
MassIVE (6)
MetaboLights (6)
GNPS (2)
jPOST (1)
PanoramaPublic (1)

Tissue

Blood cell (6)
Cell culture (5)
Permanent cell line cell (5)
Blood (3)
Seed (3)
Brain (2)
Skin (2)
Stem cell (2)
T cell (2)
Bacterial protein (1)
Blood plasma (1)
Blood serum (1)
Bone marrow (1)
Cell suspension culture (1)
Embryo (1)
Embryonic fibroblast (1)
Epithelial cell (1)
Erythrocyte (1)
Fat body (1)
Flower bud (1)
Fungal cell (1)
Gland (1)
Head and neck squamous cell carcinoma cell (1)
Homo sapiens protein (1)
Keratinocyte (1)
Leukocyte (1)
Liver (1)
Lymph gland crystal cell (1)
MDA-MB-231 cell (1)
T-lymphocyte (1)

Disease

Disease free (3)
COVID-19 (2)
Plasmodium falciparum malaria (2)
Multiple myeloma (1)
Age related macular degeneration (1)
Breast cancer (1)
Colon cancer (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Myeloproliferative neoplasm (1)
Pulmonary tuberculosis (1)
Skin squamous cell carcinoma (1)
Squamous cell carcinoma of the skin (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (49)
Shotgun proteomics (32)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (6)
Mass spectrometry (5)
Data-dependent acquisition (4)
Gel-based experiment (2)
SWATH MS (2)
Illumina HumanOmniExpress-12 v1., Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (7)
Q Exactive (3)
Illumina HiSeq 4000 (2)
Impact II (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
LTQ FT (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
TSQ Quantiva (1)
Thermo Fischer-Orbitrap Fusion Tribrid (1)
Liquid Chromatography MS - - - Q Exactive (1)
Bruker (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2012 (17)
2013 (14)
2010 (12)
2021 (11)
2014 (11)
2011 (9)
2023 (9)
2016 (8)
2020 (8)
2025 (8)
2026 (7)
2017 (7)
2015 (7)
2008 (6)
2009 (5)
2022 (5)
2019 (4)
2024 (4)
2018 (3)
2007 (2)

CHEBI ID

CHEBI:17234 (3)
CHEBI:25094 (3)
CHEBI:18237 (3)
CHEBI:16449 (3)
CHEBI:16737 (3)
CHEBI:74767 (2)
CHEBI:83501 (2)
CHEBI:133185 (2)
CHEBI:80473 (2)
CHEBI:133435 (2)
CHEBI:133066 (2)
CHEBI:133005 (2)
CHEBI:82942 (2)
CHEBI:68449 (2)
CHEBI:68447 (2)
CHEBI:176478 (2)
CHEBI:176456 (2)
CHEBI:37946 (2)
CHEBI:133532 (2)
CHEBI:133186 (2)
CHEBI:77761 (2)
CHEBI:90344 (2)
CHEBI:68505 (2)
CHEBI:27838 (2)
CHEBI:27410 (2)
CHEBI:23774 (2)
CHEBI:71018 (2)
CHEBI:8087 (2)
CHEBI:45826 (2)
CHEBI:1606 (2)

Metabolite Name

Lysine (2)
Glutamate (2)
Glucose (2)
Alanine (2)
Lactate (2)
Pyruvate (2)
Creatinine (2)
N,N,N-Trimethyl-L-alanyl-L-proline betaine (TMAP) (1)
4-quinolinecarboxylic acid (1)
N-acetyl glycoprotein (1)
Dimethylarginine; LC-tDDA; CE10 (1)
Ne,Ne-Dimethyl-lysine (1)
Protocatechiuc acid 4-O-sulfate (1)
N2-Succinylglutamic acid (1)
5-Carboxy-2-deoxyuridine (1)
Methylgallic O-sulfate (1)
Dihydromaleimide beta-glucoside (1)
4-O-alpha-Galactopyranuronosyl-galacturonic acid (1)
3-hydroxy-3-(3-hydroxyphenyl)propanoic acid O-sulphate (1)
Cysteinosuccinic acid (1)
4-methoxy-3-(sulfooxy)benzoic acid (1)
Galactose 6-sulfate (1)
3-Sulfooxybutanoic acid (1)
Glucose 6-sulfate (1)
Glycerophosphorylethanolamine (1)
4-Hydroxy-5-(dihydroxyphenyl)valeric acid O-sulphate (1)
Succinylserine (1)
3-O-sulfo-beta-galactose (1)
Sinapinic acid-O-sulfate (1)
TRIBOA-beta glucoside (1)

First Public Date

2024 (4)
2020 (2)
2014 (1)

Classification

bacteria (2)

Study type

Transcription profiling by array (65)
RNA-seq of coding RNA (10)
ChIP-seq (9)
Methylation profiling by array (3)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (323)
2023 (319)
2021 (306)
2025 (291)
2024 (276)
2020 (223)
2019 (188)
2017 (148)
2018 (141)
2016 (131)
2015 (109)
2014 (96)
2012 (80)
2013 (78)
2011 (52)
2026 (44)
2010 (42)
2009 (35)
2008 (31)
2007 (17)
2006 (10)
2004 (4)
2005 (3)
2003 (3)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

National Institute of Plant Genome Research, JNU Campus, Aruna Asaf Ali Marg, New Delhi-110067, India (3)
1. Proteomics Facility, Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, the Netherlands; 2. Biomolecular Mass Spectrometry and Proteomics, Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH, Utrecht, the Netherlands (1)
Associate Professor & Co-Chair, Biology Division Indian Institute of Science Education and Research (IISER Pune) Dr. Homi Bhabha Road, Pashan, Pune-411008. Maharashtra, India. (1)
Biochemistry and Molecular Biologoy, University of British Columnbia, Canada (1)
Biological Engineering, CEHS, MIT (1)
Biotechnology Research and Innovation Council, National Institute of Biomedical Genomics (BRIC-NIBMG), Kalyani, 741251, India. (1)
Bradley Distinguished Professor Chair of Cancer Biology & Research Professor of Cell Biology Centre for Cancer Biology University of South Australia (1)
CSIR-CCMB (1)
Center for Addiction Research Department of Pharmacology and Toxicology The University of Texas Medical Branch Galveston, TX 77555 (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Department of Biochemistry, University of Calcutta (1)
Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai, India (1)
Department of Cellular and Molecular Medicine, School of Medicine, University of California San Diego, La Jolla, CA. (1)
Department of Comparative Biology and Experimental Medicine, Faculty of Veterinary Medicine, University of Calgary; Hotchkiss Brain Institute, University of Calgary; Alberta Children’s Hospital Research Institute, University of Calgary (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Proteomics and Signal Transduction; Max-Planck Institute of Biochemistry; Martinsried, Bavaria, 82152; Germany (1)
Dipyaman Ganguly, IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal , India, 700091 (1)
Director (1)
Discovery Proteomics Facility University of Oxford Target Discovery Institute, NDMRB Oxford, OX3 7FZ (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (lab head) (1)
Experimental Systems Immunology Laboratory, Max-Planck Institute of Biochemistry, Martinsried, Germany. (1)
Experimental Systems Immunology, Max-Planck Institute of Biochemistry, Martinsried, Germany (1)
Functional Proteomics, ICR (1)
Head of the Curie Institute's mass spectrometry platform (LSMP) (1)
Howard Hughes Medical Institute Department of Molecular Biology and Genetics, Johns Hopkins Medical Institute 725 N. Wolfe Street 714 PCTB Baltimore, MD 21205 410-614-4928 (1)
Howard Hughes Medical Institute and Department of Molecular Biology and Genetics, Johns Hopkins Medical Institute, 725 N. Wolfe Street 714 PCTB Baltimore, MD 21205 410-614-4928 (1)
IMB Mainz, Germany (1)
Institute of Bioinformatics, Discoverer Building, 7th Floor, International Tech Park, Whitefield, Bangalore - 560 066, Karnataka, India. (1)
Institute of Bioinformatics, International Technology Park, Bangalore 560066 (1)

Tags

pathogen (2)
pathogen:bacterium (2)
xref:PubMed:17510629 (1)

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Sxy induces a CRP-S regulon in Escherichia coli.

Not available

S-EPMC2725579 | biostudies-literature

Immune reposne of germline-ablated P. pacificus exposed to S. marcescens

Transcriptional profiling of germline-ablated P. pacificus worms exposed to S. marcescens for 8 hours versus germline-ablated P. pacificus exposed to the control E. coli OP50. First goal was to identify genes that are involved in immune response of germline-ablated P. pacificus when exposed to S. ma...

ORGANISM(S): Pristionchus pacificus

2012-04-17 | E-GEOD-37337 | biostudies-arrayexpress

Structural basis of heparin binding to camel peptidoglycan recognition protein-S.

Not available

S-EPMC3325777 | biostudies-literature

Structural insights into the dual strategy of recognition by peptidoglycan recognition protein, PGRP-S: structure of the ternary complex of PGRP-S with lipopolysaccharide and stearic acid.

Not available

S-EPMC3541179 | biostudies-literature

Establishment of a Long-Term Co-culture Assay for Mesenchymal Stromal Cells and Hematopoietic Stem/Progenitors.

Not available

S-EPMC7757360 | biostudies-literature

Epitranscriptomic regulation of the oxidative stress response by the radical S-adenosylmethionine methyltransferase RlmN

Bacteria possess elaborate systems to manage reactive oxygen and nitrogen species (ROS) arising from exposure to the mammalian immune system and environmental stresses. Here we report the discovery of an ROS-sensing RNA-modifying enzyme that regulates translation of stress-response proteins in the g...

ORGANISM(S): Enterococcus faecalis (Streptococcus faecalis)

2023-05-09 | PXD038178 | Pride