Small K S KS - OmicsDI

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Unknown (472)
Transcriptomics (66)
Genomics (32)
Proteomics (14)
Metabolomics (4)
Multiomics (2)

Organisms

Homo sapiens (58)
Mus musculus (25)
Escherichia coli (6)
Pseudomonas putida (2)
Caenorhabditis elegans (2)
Rattus norvegicus (2)
Arabidopsis thaliana (2)
Citrus limonia (1)
Amphimedon queenslandica (1)
Pectobacterium carotovorum (1)
Metallosphaera sedula (1)
Isochrysis galbana (1)
Pectobacterium atrosepticum (1)
Escherichia coli BW25113 (1)
Staphylococcus aureus (1)
Bos taurus (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Xanthium strumarium (1)
gut metagenome (1)

Repository

biostudies-arrayexpress (73)
EGA (25)
pride (9)
MetaboLights (4)
MassIVE (3)
PeptideAtlas (2)

Tissue

B cell (1)
Blood serum (1)
Bronchoalveolar lavage (1)
Cell suspension culture (1)
Colon (1)
Feces (1)
Heart (1)
Ileum (1)
Liver (1)
Lung (1)
Seed (1)
Spleen (1)
T cell (1)

Disease

Crohn's disease (1)
Inflammatory bowel disease (1)
Non-small cell lung carcinoma (1)
Sarcoidosis (1)
Ulcerative colitis (1)

Technology Type

Mass Spectrometry (9)
Mass spectrometry (3)
Bottom-up proteomics (2)
MSE (2)
SWATH MS (2)
Shotgun proteomics (2)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

NextSeq 500 (3)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
LTQ Orbitrap Velos (2)
MACS (1)
Affymetrix Fluidics Station 400 (1)
NextSeq 2000 (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Q Exactive (1)

Publication Date

2012 (13)
2010 (11)
2016 (10)
2015 (8)
2013 (8)
2011 (8)
2022 (5)
2014 (5)
2026 (3)
2019 (3)
2009 (3)
2021 (3)
2020 (2)
2008 (2)
2007 (2)
2024 (2)
2023 (1)
2025 (1)

UNIPROT ID/AC

A0ELI5 (2)
A0EQY3 (2)
A0JNY3 (2)
A0JNY7 (2)
A0MNP4 (2)
A0PJK7 (2)
A0PK78 (2)
A1A596 (2)
A1E5T5 (2)
A1L013 (2)
A1L0U3 (2)
A1L0U6 (2)
A1L0V6 (2)
A1L347 (2)
A1L366 (2)
A1L3B6 (2)
A1L3B8 (2)
A2A432 (2)
A2A468 (2)
A2A4P0 (2)
A2A4Z0 (2)
A2A547 (2)
A2A5N2 (2)
A2A5R2 (2)
A2A5Z6 (2)
A2A615 (2)
A2A654 (2)
A2A6A1 (2)
A2A716 (2)
A2A791 (2)

ENSEMBL ID

ENSMUSG00000021039 (2)
ENSMUSG00000027651 (2)
ENSMUSG00000093896 (2)
ENSMUSG00000094075 (2)
ENSMUSG00000094797 (2)
ENSMUSG00000094930 (2)
ENSMUSG00000095442 (2)
ENSMUSG00000096410 (2)
ENSMUSG00000098557 (2)
ENSMUSP00000141097 (2)
ENSMUSP00000141637 (2)
ENSMUSG00000072849 (1)
ENSMUSG00000076508 (1)
ENSMUSG00000076532 (1)
ENSMUSG00000076586 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000076731 (1)
ENSMUSG00000093894 (1)
ENSMUSG00000094356 (1)
ENSMUSG00000094502 (1)
ENSMUSG00000094509 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094689 (1)
ENSMUSG00000095210 (1)
ENSMUSG00000095416 (1)
ENSMUSG00000095753 (1)
ENSMUSG00000096326 (1)
ENSMUSG00000098814 (1)
ENSMUSG00000103290 (1)

CHEBI ID

CHEBI:15891 (4)
CHEBI:15746 (3)
CHEBI:16704 (3)
CHEBI:16750 (3)
CHEBI:16831 (3)
CHEBI:17154 (3)
CHEBI:17368 (3)
CHEBI:17521 (3)
CHEBI:17596 (3)
CHEBI:17752 (3)
CHEBI:17775 (3)
CHEBI:18300 (3)
CHEBI:26078 (3)
CHEBI:49033 (3)
CHEBI:109895 (2)
CHEBI:116314 (2)
CHEBI:142245 (2)
CHEBI:15318 (2)
CHEBI:15346 (2)
CHEBI:15351 (2)
CHEBI:15354 (2)
CHEBI:15355 (2)
CHEBI:15428 (2)
CHEBI:15724 (2)
CHEBI:15727 (2)
CHEBI:15756 (2)
CHEBI:15811 (2)
CHEBI:15843 (2)
CHEBI:15873 (2)
CHEBI:15927 (2)

Metabolite Name

4-guanidinobutanoate (2)
Agmatine (2)
Coenzyme A (2)
Cytosine (2)
Deoxycarnitine (2)
Gamma-glutamylglutamate (2)
Guanine (2)
Homoarginine (2)
Indinavir (2)
L-Leucine (2)
L-Tyrosine (2)
N-acetylarginine (2)
Oxyphencyclimine (2)
Phytosphingosine (2)
Prostaglandin E1 (2)
Sphingosine (2)
(+)-12-(2-Cyclopenten-1-yl)-2-dodecanone (1)
(+-)-Baclofen (1)
(+/-)-2-(1-Methylpropyl)-4,6-dinitrophenol (1)
(+/-)-Huperzine A (1)
(-)-Kobusone (1)
(-)-Pelletierine (1)
(1'S,2R,2'R,10'S,11'S,15'S)-17'-hydroxy-2',15'-dimethylspiro[oxolane-2,14'-tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane]-6',8'-diene-5,5'-dione (1)
(1-{1-[(4-hydroxy-3-methoxyphenyl)methyl]-7,8-dimethoxy-2,2-dimethyl-1,2,3,4-tetrahydro-2λ⁵-isoquinolin-2-yl}ethylidene)-λ⁴-oxidanyliumyl (1)
(10,14a-dihydroxy-2,2,4a,6a,6b,9,9,12a-octamethyl-docosahydropicen-13-yl)oxidanesulfonic acid (1)
(10S,14S)-10,14,20-trimethyl-16-methylidene-22-azahexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²³.0¹⁷,²²]tetracosan-5-ylium-7-olate (1)
(12Z)-10-Hydroxyoctadecenoylcarnitine (1)
(12aR)-4-(dimethylamino)-4a,5,10,12a-tetrahydroxy-6-methylidene-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aR)-7-chloro-4-(dimethylamino)-4,6,10,12a-tetrahydroxy-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aS)-4,7-bis(dimethylamino)-10,12,12a-trihydroxy-1,3,11-trioxo-9-(2-oxoacetamido)-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (1)

Study type

Transcription profiling by array (45)
RNA-seq of coding RNA (9)
RNA-seq of non coding RNA (6)
ChIP-seq (4)
DNA-seq (3)
Methylation profiling by array (2)
Unknown experiment type (1)
ChIP-chip by array (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (65)
2022 (60)
2023 (52)
2020 (37)
2025 (37)
2016 (34)
2012 (34)
2015 (32)
2019 (30)
2024 (26)
2014 (23)
2018 (23)
2013 (22)
2017 (20)
2011 (18)
2010 (14)
2009 (7)
2026 (3)
2008 (3)
2007 (2)
2003 (2)
2000 (1)

Lab affiliation

Charité Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW1 1AT, UK The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany (1)
Department of Molecular Sciences, Faculty of Science and Engineering, Macquarie University, North Ryde, NSW 2109, Australia (1)
Department of Systems Immunology, Weizmann Institute of Science, Rehovot, Israel (1)
Platform Proteome Analysis Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (1)
Platform proteome Analysis Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (1)
Prabakaran lab, Department of Genetics, University of Cambridge, United Kingdom (1)
Susanne Gabrielsson Associate Professor Experimental Immunology Karolinska Institutet Dept. of Medicine, Translational Immunology Unit KS L2:04, 17 176 Stockholm Sweden NOTE : the proteomic data was produced at Turku University/Åbo Akademi Turku Centre for Biotechnology. Directed by Professor Riitta Lahesmaa http://www.btk.fi/home/main/ http://www.btk.fi/proteomics/front-page/ (1)
The SCripps Research Institute (1)
University of Copenhagen Department of Biomedical Sciences Integrative Circulation Division Blegdamsvej 3B København N, DK-2200 (1)

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MuTHER adipose tissue small RNA expression

We investigate the naturally occurring variation of small RNA expression in conjunction with genetic and gene expression variation. We shall assess the variation in subabdominal fat tissue small RNA levels in 168 unrelated MuTHER individuals. Using gene expression data from the same samples, we can ...

EGAS00001000212 | EGA

E. coli BW25113 K-12 hfq vs. wild-type persister

Persisters are cells which evade stresses like antibiotics and which are characterized by reduced metabolism and a lack of genetic alterations required to achieve this state. We showed previously that MqsR and MqsA of Escherichia coli are a toxin-antitoxin pair that influence cell physiology (e.g.,...

ORGANISM(S): Escherichia coli

2009-11-07 | E-GEOD-18852 | biostudies-arrayexpress

Genome-wide Analysis Reveals Mecp2-dependent Regulation of MicroRNAs in a Mouse Model of Rett Syndrome

This SuperSeries is composed of the following subset Series: GSE24285: Genome-wide Analysis Reveals Mecp2-dependent Regulation of MicroRNAs in a Mouse Model of Rett Syndrome (mm8 chromosomal tiling arrays) GSE24286: Genome-wide Analysis Reveals Mecp2-dependent Regulation of MicroRNAs in a Mouse Mode...

ORGANISM(S): Mus musculus

2010-09-29 | E-GEOD-24329 | biostudies-arrayexpress

Self Organizing Map-Based Classification of Cathepsin k and S Inhibitors with Different Selectivity Profiles Using Different Structural Molecular Fingerprints: Design and Application for Discovery of Novel Hits.

Not available

S-EPMC6272978 | biostudies-literature

Gene expression changes during overexpression of bacterial small RNA, DicF

Hundreds of small RNAs (sRNAs) have been identified in diverse bacterial species, and while the functions of most remain unknown, some regulate key processes, particularly stress responses. The sRNA DicF was identified over twenty-five years ago as an inhibitor of cell division, but since then has r...

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2016-01-16 | E-GEOD-76916 | biostudies-arrayexpress

Genome-wide analysis of small intestinal gene expression of control and villinCre:Shp2fl mutant mice

Analysis of genes regulated by Shp2 mediated signaling in the small intestine Total RNA from small intestine of 6 villinCre;Shp2fl conditional mutant mice was compared to 6 control mice

ORGANISM(S): Mus musculus

2014-02-24 | E-GEOD-50785 | biostudies-arrayexpress

Small extracellular vesicles from serum (human)

Quantitative comparison of the protein load of small extracellular vesicles circulating in serum prior and after high intensity interval training.

ORGANISM(S): Homo sapiens (Human)

2022-02-15 | PXD020330 | Pride

EGAS00001000212-sc-20120201 - samples

MuTHER adipose tissue small RNA expression

EGAD00001000105 | EGA

microRNA Targetome Analysis of Latently KSHV-infected Primary Effusion Lymphoma Cell lines Using PAR-CLIP [Illumina]

Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and, often, EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in viral latency and lymphomagenesis. Here we ...

ORGANISM(S): Homo sapiens

2011-11-16 | E-GEOD-32109 | biostudies-arrayexpress

Glyceraldehyde-3-phosphate dehydrogenase from Citrobacter sp. S-77 is post-translationally modified by CoA (protein CoAlation) under oxidative stress.