Small evs - OmicsDI

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Unknown (1345)
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Homo sapiens (198)
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other sequences (3)
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synthetic construct (2)
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Escherichia coli K-12 (1)
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Organisms

Homo sapiens (174)
Mus musculus (65)
Bos taurus (18)
Rattus norvegicus (4)
Equus caballus (3)
Canis lupus familiaris (3)
Arabidopsis thaliana (3)
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Repository

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geo (232)
pride (177)
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Technology Type

Mass Spectrometry (177)
Shotgun proteomics (91)
Bottom-up proteomics (49)
Data-dependent acquisition (25)
Data-independent acquisition (22)
Gel-based experiment (13)
SWATH MS (9)
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Mass spectrometry (4)
Top-down proteomics (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
DiaPASEF (1)
Metaproteomics (1)

Instrument Platform

Illumina HiSeq 2500 (7)
NextSeq 500 (6)
Q Exactive (4)
Q Exactive HF-X (4)
Illumina TruSeq Small RNA Sample kit (2)
TRIzol reagent (2)
None (2)
Illumina HiSeq 4000 (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion (2)
Q Exactive Plus (2)
TimsTOF Pro (2)
MiRDeep2 and miRBase. v22 database (1)
HPC (1)
NEXTflex small RNA library preparation kit v4; TruSeq exome RNA library preparation kit (Illumina); High Sensitivity DNA ScreenTape D1000 (1)
QIAzol and miRNeasy micro kits; Bioanalyzer TapeStation 2100; Qubit microRNA assay (1)
NEB (1)
UC (1)
DNBSEQ-G50 (1)
BD Vacutainer, 367814; ExoQuick (1)
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Illumina HiSeq 1500 (1)
NextSeq 550 (1)
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Instrument (1)
6495C Triple Quadrupole LC/MS (1)
Impact II (1)

Publication Date

2025 (110)
2024 (70)
2026 (70)
2023 (67)
2022 (57)
2021 (50)
2018 (18)
2019 (17)
2020 (16)
2016 (12)
2015 (12)
2012 (7)
2017 (5)
2014 (4)
2013 (3)
2010 (3)
2011 (1)
2009 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:17822 (2)
CHEBI:18186 (2)
CHEBI:16977 (2)
CHEBI:15741 (2)
CHEBI:28044 (2)
CHEBI:17203 (2)
CHEBI:16704 (2)
CHEBI:32816 (2)
CHEBI:30915 (2)
CHEBI:16737 (2)
CHEBI:17490 (2)
CHEBI:16414 (2)
CHEBI:27897 (2)
CHEBI:17191 (2)
CHEBI:15603 (2)
CHEBI:71559 (1)
CHEBI:57614 (1)
CHEBI:47979 (1)
CHEBI:189710 (1)
CHEBI:91144 (1)
CHEBI:47878 (1)
CHEBI:28013 (1)
CHEBI:89582 (1)
CHEBI:191640 (1)
CHEBI:17665 (1)
CHEBI:84634 (1)
CHEBI:21949 (1)
CHEBI:24344 (1)
CHEBI:40521 (1)

Metabolite Name

Glycine (2)
Glutathione (2)
Ornithine (2)
Cytosine (2)
Cytidine (2)
M275T207 (1)
M356T257 (1)
Docosatetraenoylcarnitine (1)
(aspartyl)adenylate (1)
(S)-Nerolidol_3-O-[a-L-rhamnopyranosyl-(1->2)-b-D-glucopyranoside] (1)
3-(3-(1,2-Dihydroxy-1,2-dihexanoyl)thiopropane)inositol-4,5-diphosphate (1)
Spinacoside_D (1)
Daidzein_6''-O-acetate (1)
N-Succinimidyl 4-[4-(dimethylamino)phenylazo]benzoate (1)
1-Cyclohexyl-3-(3,4-dichlorophenyl)urea (1)
N-[(4E,8Z)-1,3-dihydroxyoctadeca-4,8-dien-2-yl]hexadecanamide_1-glucoside (1)
Phosphoramide_mustard (1)
5'-Amino-2,3'-bithiophene-4'-carboxamide (1)
4-Methoxy-6-[2-[4-(3-methylbut-2-enoxy)phenyl]ethyl]-1,3-benzodioxole (1)
1-(Pyrimidin-2-yl)-1,4-diazepane (1)
N-Benzoylaminopurine (1)
4-{5-Bromo-1H-pyrazolo[3,4-b]pyridin-1-yl}-1-methylpiperidine (1)
N-Butyl-3,4-dichlorobenzamide (1)
[2-Amino-1-(2-chlorophenyl)ethyl]dimethylamine (1)
9(10)-Epoxy-12Z-octadecenoic acid (1)
N-Ethyl-6,7-dimethoxy-4-quinazolinamine (1)
[2-[4-methyl-2-(2-methylpropanoyloxy)phenyl]oxiran-2-yl]methyl 2-methylpropanoate (1)
N-Methyltetrahydro-2H-pyran-4-amine (1)
Ethyl 5-(2-chloroacetyl)-2,4-dimethyl-1H-pyrrole-3-carboxylate (1)
Bis(2,4,6-trimethylphenyl)phosphine (1)

First Public Date

2025 (87)
2026 (52)
2024 (51)
2023 (50)
2022 (39)
2021 (35)
2019 (23)
2020 (22)
2018 (13)
2017 (4)
2016 (3)
2015 (3)
2014 (3)
2013 (1)

Classification

bacteria (3)
helminths (2)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study status

Not provided (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (11)
MicroRNA profiling by high throughput sequencing (5)
RNA-seq of non coding RNA (5)
MicroRNA profiling by array (3)
RNA-seq of total RNA (2)
MicroRNA profiling by high-throughput sequencing (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)
ChIP-seq (1)
Observational (1)

Release Date

2023 (223)
2024 (199)
2022 (199)
2021 (197)
2025 (192)
2020 (133)
2019 (75)
2018 (40)
2017 (33)
2026 (30)
2015 (28)
2016 (26)
2012 (8)
2014 (7)
2013 (4)
2010 (3)
2011 (2)
2009 (1)

Lab affiliation

Head of the Curie Institute Mass Spectrometry Platform (4)
Vanderbilt University Proteomics Core (3)
Baker Institute (2)
Cedars-Sinai Medical Center (2)
Head of Cell Signaling and Clinical Proteomics Group. IIS Biobizkaia. Ikerbasque. (2)
Novo Nordisk Foundation, Center for Protein Research Faculty of Health and Medical Sciences University of Copenhagen Blegdamsvej 3B, DK-2200 Copenhagen N Denmark (2)
Shanghai Jiao Tong University Affiliated Sixth People's Hospital (2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2 Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
1)Department of Pediatrics III, University Hospital Essen, Hufelandstrasse 55, 45147 Essen, Germany. 2)Department of General, Visceral, Vascular and Transplant Surgery, Medical Faculty, University Hospital Essen, Hufelandstrasse 55, 45147 Essen, Germany. (1)
1: Physiology of reproduction, Veterinary Faculty, Campus of Excellence Mare Nostrum, University of Murcia. 2: IMIB-Arrixaca, Murcia, Spain. (1)
1The Ritchie Centre, Hudson Institute of Medical Research.Shanti Gurung1(shanti.gurung@hudson.org.au) Jacqueline Piskopos1(jpis0002@student.monash.edu) Joel Steele2 (joel.steele@monash.edu) Ralf Schittenhelm2 (ralf.schittenhelm@monash.edu) Anup Shah2 (anup.shah@monash.edu) Fiona Cousins1 (fiona.cousins@hudson.org.au) Thomas Tapmeier1,3 (thomas.tapmeier@monash.edu) Caroline E. Gargett1,3 (caroline.gargett@hudson.org.au) (1)
Academia Sinica, Institute of Biological Chemistry (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (1)
Associate Professor (1)
Associate Professor, Cedars-Sinai Medical Center, Surgery (1)
Associate Professor, Department of Pathology, Faculty of Medicine, The University of Hong Kong (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bioeconomy Science Institute / AgResearch group, Lincoln, New Zealand (1)
Biomolecular Mass Spectrometry and Proteomics group, Utrecht University, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands; Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands; and Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands (1)
BoRdeaux Institute of onCology (BRIC) UMR1312 Inserm / Université de Bordeaux Team 3 Liver cancers and invasion 146 rue Léo Saignat 33076 Bordeaux, France (1)
CDSS Bioanalytical Facility, LIV-SRF, Dept. Pharmacology & Therapeutics, Institute for Systems, Molecular and Integrative Biology, University of Liverpool (1)
CRG / UPF (1)
CRG/UPF (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (1)
Cell Culture Technology, Technical Faculty, Bielefeld University, Germany (1)
Cellular & Molecular Metabolism Laboratory, Drug Discovery Biology, Monash Institute of Pharmaceutical Sciences, Monash University. (1)
Centre INRAE Val de Loire UMR physiologie de la Reproduction et des comportements (1)

Location

France (1)

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The untargeted metabolites of field EVs from Xinglinwan Reservoir, Xiamen, China.

Microorganisms secrete extracellular vesicles (EVs) that transport bioactive molecules such as proteins, metabolites, and enzymes. While their functions are well studied in model microbes, their ecological contributions to natural ecosystems remain largely unexplored.To address this issue, we per...

2026-01-21 | MTBLS12874 | MetaboLights

Characterization of small intracellular vesicles uncovers their potential as drug carriers and therapeutic agents

Small extracellular vesicles (sEVs) have been extensively investigated as a source of clinically relevant cargo. Alongside the secretion of EVs, such as exosomes, cells house a multitude of internal vesicles involved in various physiologic processes and metabolic activities. Herein, we developed ...

2025-09-02 | MTBLS12923 | MetaboLights

Differentially enriched miRNAs in EVs derived from young and aged osteocytes of mice

Vascular calcification often occurs with osteoporosis, a contradictory association called “calcification paradox”. We find that extracellular vesicles (EVs) released from aged bone matrix (AB-EVs) during bone resorption favor adipogenesis rather than osteogenesis of BMSCs and augment calcification o...

ORGANISM(S): Mus musculus

2022-02-15 | E-MTAB-11417 | biostudies-arrayexpress

Intracellular and extracellular microRNAs expressed by HEK293T cells

MicroRNAs (miRNAs) are a class of small RNA molecules that regulate expression of specific mRNA targets. They can be released from cells, often encapsulated within extracellular vesicles (EVs), and therefore have the potential to mediate intercellular communication. It has been suggested that certai...

ORGANISM(S): Homo sapiens

2012-06-25 | E-GEOD-38916 | biostudies-arrayexpress

Comparative transcriptomic analysis of human and Drosophila extracellular vesicles reveals extensive conservation

Extracellular vesicles (EVs) are membrane-enclosed nanoparticles containing specific repertoires of genetic material. In mammals, EVs can mediate the horizontal transfer of various cargos and signaling molecules, notably miRNA and mRNA species. Whether this form of intercellular communication prevai...

ORGANISM(S): Homo sapiens

2016-06-15 | E-GEOD-76173 | biostudies-arrayexpress

Small RNA sequencing analysis of Myo-Evs

PRJNA701664 | ENA

Osteoblasts secrete miRNA-containing extracellular vesicles that enhance expansion of human umbilical cord blood cells

Osteolineage cells represent one of the critical bone marrow niche components that support maintenance of hematopoietic stem and progenitor cells (HSPCs). Recent studies demonstrate that extracellular vesicles (EVs) regulate stem cell development via horizontal transfer of bioactive cargo, including...

ORGANISM(S): Homo sapiens

2016-10-05 | E-MTAB-4560 | biostudies-arrayexpress

Serum Small Extracellular Vesicles Proteome of Tuberculosis Patients Demonstrated Deregulated Immune Response.

Detailed understanding of host pathogen interaction in tuberculosis is an important avenue for identifying novel therapeutic targets. Small extracellular vesicles (EVs) like exosomes are rich in proteins, nucleic acids and lipids, act as messenger and may show altered composition in disease conditio...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2018-05-29 | MSV000082412 | MassIVE

RNA-Seq of effects of exercise-induced Extracellular Vesicles on an F344 rat (Rattus norvegicus) model of forced running wheel exercise

n total, 16 7-week-old male F344 rats were subjected to model regular exercise and sedentary lifestyle. In the second week after arrival and acclimatization to the reversed light/dark cycle, rats were introduced to the forced running wheel without a specific running mode. It was followed by a 12-day...

ORGANISM(S): Rattus norvegicus

2021-12-28 | E-MTAB-11020 | biostudies-arrayexpress

Proteomic analysis of small and large EVs from DKs8 cells

We used iTRAQ-quantitative proteomics analysis to identify protein cargos that may contribute to different functions of exosome-enriched small extracellular vesicles (EVs) and MV-enriched large EVs derived from a colorectral cancer cell line, DKs8.

ORGANISM(S): Homo sapiens (Human)

2019-01-17 | PXD010840 | Pride

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