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ProteomicsNeisseria meningitides small RNA's regulate Citric acid cycle activity under Feast and Famine conditions
We identified twin small non-coding RNAs regulating tricarboxylic acid (TCA) cycle activity in Neisseria meningitidis. Expression of TCA cycle enzymes was elevated in sRNA deletion mutants. Direct interaction between sRNAs and the ribosomal entry sites on target mRNAs was demonstrated. Expression of...
ORGANISM(S): Neisseria meningitidis serogroup B 
2017-03-22 | PXD000891 | Pride
Data independant mass spectrometry Pathogens Neisseria meningitides Feast and famine Small rna's 
TranscriptomicsSmall RNA discovery in developing mouse and during human in vitro beta-cell differentiation protocol
The aim of this experiment was to identify novel, small (<600bp), capped, polyA-tailed RNA transcripts in mouse E14.5 pancreas, liver, and brain and at stages S1, S2, S3 within our human in vitro beta-cell differentiation protocol. Low-molecular-weight (LMW) and high-molecular-weight (HMW) fractions...
ORGANISM(S): Mus musculus 
2015-04-02 | E-MTAB-3489 | biostudies-arrayexpress
TranscriptomicsComparative Characterization of Cardiac Development Specific microRNAs: Fetal Regulators for Future
MicroRNAs (miRNAs) are small, conserved RNAs known to regulate several biological processes by influencing gene expression in eukaryotes. The implication of miRNAs as another player of regulatory layers during heart development and diseases has recently been explored. The present study was design...
ORGANISM(S): Gallus gallus 
2015-06-09 | E-GEOD-69663 | biostudies-arrayexpress
GenomicsInvestigation on different small RNA expression of TT19 suppressors under anthocyanin induction condition (AIC) using Small RNA-seq
To investigate the functions of TRANSPARENT TESTA 19 (TT19) on anthocyanin accumulation and stabilization using forward genetic screening approach. EMS mutagenized tt19 mutant to screen tt19 mutant suppressors that could restore the anthocyanin accumulation and the causative mutations were identifie...
ORGANISM(S): Arabidopsis thaliana 
2020-04-20 | GSE136901 | GEO
TranscriptomicsAnalysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns
Sugarcane is an important crop worldwide for sugar production and increasingly, as a renewable energy source. Modern cultivars have polyploid, large complex genomes, with highly unequal contributions from ancestral genomes. Long Terminal Repeat retrotransposons (LTR-RTs) are the single largest compo...
ORGANISM(S): Saccharum officinarum 
2012-04-16 | E-GEOD-35143 | biostudies-arrayexpress
Genomics
small RNA production in Fusarium verticillioides
PRJNA860945 | ENA
GenomicsInvestigation on different small RNA expression of TT19 suppressors under anthocyanin induction condition (AIC) using Small RNA-seq
Investigation on different small RNA expression of TT19 suppressors under anthocyanin induction condition (AIC) using Small RNA-seq
PRJNA564017 | ENA
GenomicsGenome-wide changes in FOXA1 binding after MEN1 silencing in MCF-7 cells
We performed ChIP-seq using FOXA1 antibodies in MCF-7 cells after induction of small hairpin RNA's directed at the MEN1 mRNA or a control sequence. We demonstrate that at menin-bound loci FOXA1 binding is disrupted by MEN1 silencing.
ORGANISM(S): Homo sapiens 
2017-03-10 | GSE94001 | GEO
GenomicsGenome-wide changes in H3K4me3 after MEN1 silencing in MCF-7 cells
We performed ChIP-seq using H3K4me3 antibodies in MCF-7 cells after induction of small hairpin RNA's directed at the MEN1 mRNA or a control sequence. We demonstrate that at a selected group of loci H3K4me3 is affected by MEN1 silencing.
ORGANISM(S): Homo sapiens 
2017-03-09 | GSE85315 | GEO
TranscriptomicsMessenger RNA expression after silencing or inhibition of MEN1in MCF-7 breast cancer cells
We performed RNA-seq in MCF-7 cells after silencing of MEN1 using small hairpin RNA's directed at the MEN1 mRNA or chemical inhibition of the MEN1 gene product, menin. We demonstrate that a selected group of transcripts is affected by reduced menin function.
ORGANISM(S): Homo sapiens 
2017-03-09 | GSE86316 | GEO
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