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ProteomicsProteomic diversity in bacteria: Insights and implications for bacterial identification
We acquired the largest bacterial proteomic resource, covering 303 species, 119 genera, and five phyla. The proteome coverage is, on average, over 50%. Additionally, we acquired further datasets for bacterial identification algorithm validation: i) 303 species at a 30-minute gradient (38 samples per...
ORGANISM(S): Bacteria (ncbitaxon:2) 
2024-12-06 | MSV000096603 | MassIVE
TranscriptomicsTranscriptional profiling analysis by microarray comparing the isogenic wild-type strain Bacillus thuringiensis 407 with a markerless cdgF deletion mutant was performed with exponentially growing cells in planktonic culture.
The transcriptional global profiles of the wild-type strain Bacillus thuringiensis 407 and a cdgF deletion mutant were compared after 1.5 hours of growth in an planktonic culture to analyze the effect of deletion of cdgF, which is involved in c-di-GMP signaling, on the global expression profile of B...
ORGANISM(S): Bacillus thuringiensis Bt407 
2019-07-30 | E-MTAB-8092 | biostudies-arrayexpress
ProteomicsMtb_Trypsin_Lysc
The digestive enzymes are trypsin and Lysc
ORGANISM(S): Mycobacterium Tuberculosis 
2012-12-31 | PAe003638 | PeptideAtlas
ProteomicsMtb_Trypsin_Lysc_membrane
The digestive enzymes are trypsin and Lysc, membrane
ORGANISM(S): Mycobacterium Tuberculosis 
2012-12-31 | PAe003637 | PeptideAtlas
ProteomicsMtb_Triple_Digest
The digestive enzymes are trypsin, chymotrypsin and Lysc
ORGANISM(S): Mycobacterium Tuberculosis 
2012-12-31 | PAe003636 | PeptideAtlas
ProteomicsMtb_Triple_Digest_membrane
The digestive enzymes are trypsin, chymotrypsin and Lysc, membrane
ORGANISM(S): Mycobacterium Tuberculosis 
2012-12-31 | PAe003635 | PeptideAtlas
UnknownClinical Syndromic Phenotypes and the Potential Role of Genetics in Pulmonary Vein Stenosis.
Not available
S-EPMC7916466 | biostudies-literature
ProteomicsUnified workflow for the rapid and in-depth characterization of bacterial proteomes
Among the kingdoms of life, bacteria are by far the most abundant, but also the most diverse organisms. Due to this excessive diversity, finding a unified, comprehensive and safe workflow for quantitative bacterial proteomics is highly challenging. In this study, we have systematically evaluated and...
ORGANISM(S): Bacillus Subtilis (ncbitaxon:1423) Enterococcus Faecalis (ncbitaxon:1351) Vibrio Proteolyticus (ncbitaxon:671) Lactobacillus Delbrueckii (ncbitaxon:1584) Burkholderia Cepacia (ncbitaxon:292) Streptococcus Mitis (ncbitaxon:28037) Staphylococcus Aureus (ncbitaxon:1280) Escherichia Coli (ncbitaxon:562) Bifidobacterium Bifidum (ncbitaxon:1681) Sphingobacterium Spiritivorum (ncbitaxon:258) Deinococcus Radiodurans (ncbitaxon:1299) Prevotella Melaninogenica (ncbitaxon:28132) Micrococcus Luteus (ncbitaxon:1270) Cutibacterium Acnes (ncbitaxon:1747) Brevundimonas Diminuta (ncbitaxon:293) Pseudomonas Aeruginosa (ncbitaxon:287) Anoxybacillus Flavithermus (ncbitaxon:33934) Acetobacter Aceti (ncbitaxon:435) Mycolicibacterium Smegmatis (ncbitaxon:1772) Listeria Monocytogenes (ncbitaxon:1639) Clostridium Sporogenes (ncbitaxon:1509) Bacillus Cereus (ncbitaxon:1396) Corynebacterium Glutamicum (ncbitaxon:1718) 
2023-01-18 | MSV000091088 | MassIVE
MetabolomicsIntegrated multi-omics analysis of adverse cardiac remodeling and metabolic inflexibility upon ErbB2 and ERRα deficiency
Functional oncogenic links between ErbB2 and ERRα in HER2+ breast cancer patients support a therapeutic benefit of co-targeted therapies. However, ErbB2 and ERRα also play key roles in heart physiology, and this approach could pose a potential liability to cardiovascular health. Herein, using integr...
2022-09-20 | MTBLS795 | MetaboLights
ProteomicsIdentification of regulators of polyploidization presents therapeutic targetsfor treatment of AMKL
Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Go...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2014-01-27 | MSV000078536 | MassIVE
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