Smith John W JW

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Unknown (156)
Genomics (4)
Proteomics (4)
Metabolomics (2)
Transcriptomics (1)

Organisms

Homo sapiens (4)
Bos taurus (2)

Repository

EGA (4)
MassIVE (3)
MetaboLights (2)
biostudies-arrayexpress (1)
PanoramaPublic (1)

Technology Type

Affymetrix 6.0 (1)
Mass spectrometry (1)
Mass spectrometry assay (1)

Instrument Platform

Agilent 5975C Series GC/MSD (1)
In-house built IMS-MS with Agilent 6538 QTOF MS (1)
Q Exactive (1)
RapidFire 365 coupled with Agilent 6560 Ion Mobility QTOF (1)
SLIM TWIMS-MS coupled with Agilent 6224 TOF (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2010 (1)
2020 (1)
2018 (1)
2017 (1)
2026 (1)
2024 (1)

CHEBI ID

CHEBI:16737 (2)
CHEBI:1127735 (1)
CHEBI:127762 (1)
CHEBI:134216 (1)
CHEBI:1427 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15366 (1)
CHEBI:15428 (1)
CHEBI:15603 (1)
CHEBI:15727 (1)
CHEBI:15728 (1)
CHEBI:15729 (1)
CHEBI:15741 (1)
CHEBI:15891 (1)
CHEBI:15908 (1)
CHEBI:15940 (1)
CHEBI:15971 (1)
CHEBI:16020 (1)
CHEBI:16135 (1)
CHEBI:16259 (1)
CHEBI:16347 (1)
CHEBI:16359 (1)
CHEBI:16411 (1)
CHEBI:16414 (1)
CHEBI:16437 (1)
CHEBI:16450 (1)
CHEBI:16467 (1)
CHEBI:16543 (1)
CHEBI:16704 (1)

Metabolite Name

Creatinine (2)
(+)-S,S-Ethambutol (1)
(+)-Thioctic acid (1)
(+)-yohimbine (1)
(+/-)-Camphoric acid (1)
(+/-)-Hesperetin (1)
(+/-)-Metanephrine (1)
(-)-Oxycodone (1)
(-)-Oxymorphone (1)
(-)-Shikimic acid (1)
(-)-secoisolariciresinol (1)
(12-Methyl-7-tetraphenyl)methyl hydrogen sulfate (1)
(2E)-3-(3,4-Dimethoxyphenyl)acrylic acid (1)
(2E)-3-(4-Hydroxy-3-methoxyphenyl)-N-(4-oxobutyl)acrylamide (1)
(2E)-3-Methyl-4-(sulfooxy)-2-butenoic acid (1)
(2E)-N-[2-(Dihydroxymethyl)-4-hydroxy-5-methoxyphenyl]-3-(4-hydroxy-3-methoxyphenyl)acrylamide (1)
(2R)-1-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-3-hydroxy-2-propanyl (6Z,9Z,12Z,15Z)-6,9,12,15-octadecatetraenoate (1)
(2R,3R)-2-(3,4-Dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 4-hydroxybenzoate (1)
(2R,3S)-3-Hydroxy-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylic acid (1)
(2S)-3-(1H-Imidazol-4-yl)-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-6-Amino-2-[(E)-(hydroxymethylene)amino]hexanimidic acid (1)
(2Z)-(2,6-Dihydroxy-3,4-dimethoxycyclohexylidene)acetonitrile (1)
(3S)-3-{[(2E)-3-Carboxy-2-propenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S)-3-{[(2E)-4-Carboxy-2-butenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S,4S)-7,12-Dimethyl-3,4-dihydro-3,4-tetraphenediol (1)
(4-Ethoxyphenyl)urea (1)
(4E)-2-Amino-3-oxo-4-undecenoic acid (1)
(4R,5S,9S,10R,12S,13S)-1,5,9-Trimethyl-11,14,15,16-tetraoxatetracyclo[10.3.1.0~4,13~.0~8,13~]hexadecan-10-ol (1)
(4S)-4-[(2E,4Z)-2,4-Decadienoyloxy]-4-(trimethylammonio)butanoate (1)
(4beta,8alpha,9R)-6'-Methoxycinchonan-3,9-diol (1)

Study type

RNA-seq of coding RNA (1)

Release Date

2022 (26)
2021 (25)
2017 (14)
2023 (12)
2016 (11)
2020 (9)
2025 (8)
2014 (7)
2011 (7)
2024 (6)
2015 (6)
2018 (5)
2013 (5)
2012 (5)
2010 (4)
2019 (4)
2026 (1)
2009 (1)
2008 (1)

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Continued Excellent Outcomes in Previously Untreated Patients With Follicular Lymphoma After Treatment With CHOP Plus Rituximab or CHOP Plus ¹³¹I-Tositumomab: Long-Term Follow-Up of Phase III Randomized Study SWOG-S0016.

Not available

S-EPMC6553811 | biostudies-literature

Habitual Coffee Intake Shapes the Gut Microbiome and Modifies Host Physiology and Cognition: double-blind, randomised, parallel design

Coffee influences multiple physiological processes, including gut function, stress, cognition, and the microbiome. However, the mechanisms underlying these effects remain poorly understood. In this study, we examined coffee’s impact on the microbiota–gut–brain axis—a bidirectional communication p...

2026-03-26 | MTBLS13401 | MetaboLights

Mesenchymal stromal cell aging impairs the self-organizing capacity of lung alveolar epithelial stem cells.

Not available

S-EPMC8445616 | biostudies-literature

An Atlas of Bovine Gene Expression Reveals Novel Distinctive Tissue Characteristics and Evidence for Improving Genome Annotation

Background: A comprehensive transcriptome survey, or "gene atlas", provides information essential for a complete understanding of the genomic biology of an organism. We present an atlas of RNA abundance for 92 adult, juvenile and fetal cattle tissues and 3 cattle cell lines. Results: The ...

ORGANISM(S): Bos taurus

2010-09-28 | E-GEOD-21544 | biostudies-arrayexpress

Epigenetic Control of Drought Acclimation in Sorghum (EPICON): Leaf and Root Proteomics

Two cultivars of Sorghum biocolor were examined from a study performed at the Kearney Research Station in California; 1) a pre-flowering drought tolerant, post-flowering drought susceptible cultivar RTx430 and 2) a pre-flowering drought susceptible, post-flowering drought-tolerant cultivar BTx642. S...

ORGANISM(S): Sorghum Bicolor (ncbitaxon:4558)

2018-06-21 | MSV000082487 | MassIVE

Oligogenic genetic variation of neurodegenerative disease genes in 980 postmortem human brains.

Not available

S-EPMC6204946 | biostudies-literature

Epigenetic Control of Drought Acclimation in Sorghum (EPICON)

Two cultivars of sorghum were examined from a study performed at the Kearney Research Station in California; 1) a pre-flowering drought tolerant, post-flowering drought susceptible cultivar RTx430 and 2) a pre-flowering drought susceptible, post-flowering drought-tolerant cultivar BTx642. These dat...

ORGANISM(S): Sorghum Bicolor (ncbitaxon:4558)

2017-10-23 | MSV000081639 | MassIVE

Genetic compendium of 1511 human brains available through the UK Medical Research Council Brain Banks Network Resource.

Not available

S-EPMC5204341 | biostudies-literature

Mitochondrial DNA point mutations and relative copy number in 1363 disease and control human brains.

Not available

S-EPMC5290662 | biostudies-literature

Frequency and signature of somatic variants in 1461 human brain exomes.

Not available

S-EPMC6544539 | biostudies-literature