Smith Samantha S

Show results for

Genomics (14)
Unknown (5)
Metabolomics (4)
Transcriptomics (2)
Proteomics (2)
Genomic (1)

Organisms

Homo sapiens (13)
Mus musculus (3)
Salmonella enterica subsp. enterica serovar Typhimurium (1)

Repository

EGA (13)
MetaboLights (4)
biostudies-arrayexpress (3)
dbGaP (1)
MassIVE (1)
pride (1)

Tissue

B cell (1)
Spleen (1)

Disease

Lymphoma (1)

Technology Type

Illumina 15K (8)
Mass spectrometry (4)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

NextSeq 500 (1)
Q Exactive Plus (1)
6550 Q-TOF LC-MS Agilent (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2020 (2)
2025 (1)
2015 (1)
2009 (1)
2018 (1)
2023 (1)
2021 (1)
2019 (1)

CHEBI ID

CHEBI:15611 (2)
CHEBI:15891 (2)
CHEBI:16108 (2)
CHEBI:16865 (2)
CHEBI:16958 (2)
CHEBI:17053 (2)
CHEBI:27389 (2)
CHEBI:37024 (2)
CHEBI:48928 (2)
CHEBI:78697 (2)
CHEBI:10072 (1)
CHEBI:1148 (1)
CHEBI:11814 (1)
CHEBI:12936 (1)
CHEBI:12962 (1)
CHEBI:133083 (1)
CHEBI:137682 (1)
CHEBI:1387 (1)
CHEBI:142276 (1)
CHEBI:143032 (1)
CHEBI:143033 (1)
CHEBI:143034 (1)
CHEBI:143035 (1)
CHEBI:143036 (1)
CHEBI:143037 (1)
CHEBI:143038 (1)
CHEBI:143039 (1)
CHEBI:143040 (1)
CHEBI:143041 (1)
CHEBI:143042 (1)

Metabolite Name

Pyruvate (2)
(+)-12-methyl myristic acid (1)
(2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-5,9-dimethylundeca-2,4,6,8,10-pentaenal (1)
(2S,4S)-Pinnatanine (1)
(4R)-4-Hydroxy-L-glutamic acid (1)
(R)-3-Hydroxybutyric acid (1)
(S)-3-Hydroxybutyric acid (1)
(S,E)-Lyratol propanoate (1)
1,2-Di-O-palmitoyl-3-O-(6-sulfoquinovopyranosyl)glycerol (1)
1,3-Diaminopropane (1)
1-Methyl-L-histidine (1)
1-Methylhistamine (1)
1-Methylnicotinamide (1)
12'-Apo-b-carotene-3,12'-diol (1)
15:0 Cholesteryl ester (1)
17-(7-hydroxy-6-methylhept-5-en-2-yl)-4,4,10,13,14-pentamethyl-1,2,5,6,12,15,16,17-octahydrocyclopenta[a]phenanthren-3-one (1)
2,2,3-Trimethyltridecanoic acid (1)
2,3-Dihydroxypropanoic acid (1)
2,3-Dihydroxypropyl hexopyranoside (1)
2,3-Diphospho-D-glyceric acid (1)
2,3-Pyridinedicarboxylic acid (1)
2,3-dihydroxypropyl icos-11-enoate (1)
2,5-Dihydroxybenzaldehyde (1)
2,5-Dihydroxybenzoic acid (1)
2-(Hydroxymethyl)butanoic acid (1)
2-Amino-3-methoxybenzoic acid (1)
2-Aminoadipic acid (1)
2-Deoxy-5-cytidylic acid (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxy-D-ribose (1)

Study type

Transcription profiling by array (2)
DNA-seq (1)

Release Date

2024 (2)
2016 (2)
2025 (1)
2015 (1)
2009 (1)
2022 (1)

Lab affiliation

Department of Genetics, Cell Bioliogy, & Anatomy Buckley Lab University of Nebraska Medical Center Omaha, Nebraska United States of America (1)

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Integrative Modeling of Quantitative Plasma Lipoprotein, Metabolic, and Amino Acid Data Reveals a Multiorgan Pathological Signature of SARS-CoV-2 Infection

The metabolic effects of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection on human blood plasma were characterized using multi-platform metabolic phenotyping with Nuclear Magnetic Resonance (NMR) spectroscopy and liquid chromatography-mass spectrometry (LC-MS). Quantitative mea...

2021-01-29 | MTBLS2014 | MetaboLights

Mining waste streams of food production for bioactive plant polysaccharides that affect the fitness and expressed activities of targeted human gut microbes

ORGANISM(S): Microbiota (ncbitaxon:13613) Mus Musculus (ncbitaxon:10090)

2018-04-18 | MSV000082287 | MassIVE

Data Science-Driven Analysis of Substrate-Permissive Diketopiperazine Reverse Prenyltransferase NotF: Applications in Protein Engineering and Cascade Biocatalytic Synthesis of (-)-Eurotiumin A.

Not available

S-EPMC9831672 | biostudies-literature

Metabolomics of Solanum lycopersicum infected by Phytophthora infestans leads to Late blight detection and reveals metabolic differences in infection times

Tomato crops suffer attacks of various pathogens that cause large production losses. Late blight caused by Phytophthora infestans is a devastating disease in tomatoes because of its difficultly to control. Here, we applied metabolomics based on liquid chromatography–mass spectrometry (LC-MS) and met...

2019-01-24 | MTBLS618 | MetaboLights

UBR5 in B cell development TMT

Coordination of a number of molecular mechanisms including transcription, alternative splicing, and class switch recombination are required to facilitate development, activation, and survival of B cells. Disruption of these pathways can result in malignant transformation. Recently, next generation s...

ORGANISM(S): Mus musculus (Mouse)

2020-11-19 | PXD014307 | Pride

Tmt ubr5 bcells spleen mouse

GWAS of Preterm Birth

Preterm birth (PTB, born before 37 weeks of gestation) is a leading cause of neonatal mortality and post-natal morbidity. PTB affects one in nine all live births in the U.S. Notably, the highest rate of PTB occurs among African Americans (one in six). PTB is a complex trait, likely determined by ...

phs000332 | dbGaP

Transcription profiling by array and functional characterization of developing cardiomyocytes from recombinant murine embryonic stem cells

Here, we characterize the transcriptome of the mouse embryonic stem cell line CM7-1 during differentiation into beating cardiomyocytes and compared the gene expression profiles with those from primary adult murine cardiomyocytes and left ventricular myocardium.

ORGANISM(S): Mus musculus

2009-03-21 | E-MEXP-1405 | biostudies-arrayexpress

Protein-metabolite interactomics of carbohydrate metabolism reveal regulation of lactate dehydrogenase

Metabolic networks are interconnected and influence diverse cellular processes. The protein-metabolite interactions that mediate these networks are frequently low affinity and challenging to systematically discover. We developed mass spectrometry integrated with equilibrium dialysis for the disco...

2023-08-07 | MTBLS7237 | MetaboLights

Reduced-Intensity Transplantation for Lymphomas Using Haploidentical Related Donors Versus HLA-Matched Sibling Donors: A Center for International Blood and Marrow Transplant Research Analysis.

Not available

S-EPMC5012706 | biostudies-literature

Next-Generation Sequencing of sgRNA spacer sequences from a CRISPRi library screen of the Salmonella enterica serovar Typhimurium 14028s genome in response to repeated monoclonal IgA treatment

For this study, we implemented the anti-lipopolysaccharide monoclonal IgA Sal4 in a genome-wide CRISPR interference (CRISPRi) screen to identify genes that modulate the extent of agglutination of Salmonella enterica serovar Typhimurium (STm) in response to antibody exposure. We leveraged our recentl...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium

2025-02-16 | E-MTAB-14834 | biostudies-arrayexpress

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