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TranscriptomicsMKL1-dependent tenascin-C transcription
The aim of the experiment is to investigate whether megakaryoblastic leukemia factor-1 (MKL1) induces tenascin-C in normal mammary epithelial HC11 and tumor mammary epithelial 4T1 cell lines, as well as to identify other genes that are transcriptionally regulated by MKL1. For this purpose, we compar...
ORGANISM(S): Mus musculus 
2011-06-10 | E-MEXP-3232 | biostudies-arrayexpress
GenomicsA study of the effect of OxLDL on C/EBP beta binding in human macrophages using chromatin immunoprecipitation for C/EBP beta with high throughput sequencing (ChIP-seq)
We report the C/EBP beta transcription factor binding landscape in human macrophages and oxLDL-induced foam cells ChIP-seq for C/EBP beta binding was performed in human macrophages and oxLDL induced-foam cells with quadruple biological replicates
ORGANISM(S): Homo sapiens 
2015-04-08 | E-GEOD-66192 | biostudies-arrayexpress
TranscriptomicsC. elegans nasp-1 / btr-1 mutant versus wild-type N2, exposed to pathogen Bacillus thuringiensis DB27
Transcriptional profiling of C. elegans nasp-1 / btr-1 mutant worms versus wild type N2 strain, both exposed to the bacterial pathogen Bacillus thuringiensis DB27. One-condition experiment. C. elegans nasp-1 / btr-1 mutant versus N2, exposed to Bacillus thuringiensis DB27. 3 biological replicates, i...
ORGANISM(S): Caenorhabditis elegans 
2013-01-31 | E-GEOD-43905 | biostudies-arrayexpress
UnknowndiffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data.
Not available
S-EPMC4539688 | biostudies-literature
TranscriptomicsInsulin-like Signaling Determines Survival During Stress via Post Transcriptional Mechanisms in C. elegans.
The insulin-like signaling (ILS) pathway regulates metabolism and is known to modulate adult lifespan in C. elegans. Altered stress responses and resistance to a wide range of stressors are also associated with changes in ILS and contribute to enhanced longevity. The transcription factors DAF-16 and...
ORGANISM(S): Caenorhabditis elegans 
2010-06-17 | E-GEOD-22383 | biostudies-arrayexpress
GenomicsIn situ Hi-C profile of neutrophils from human peripheral blood
In situ Hi-C profile of neutrophils from human peripheral blood
PRJNA660473 | ENA
TranscriptomicsC. elegans gonad-ablated (Z1-,Z4-) animals versus intact animals, N2 strain
Transcriptional profiling of C. elegans germline-ablated worms versus unablated intact animals, N2 strain One-condition experiment. C. elegans gonad-ablated versus intact N2. 3 biological replicates, including 1 dye-swap.
ORGANISM(S): Caenorhabditis elegans 
2013-03-01 | E-GEOD-44703 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of mRNA derived from fourth larval stage larvae from C. elegans strain PE1328 treated for 16 hours at 20 degrees Celsius with 5-Ph-IAA compared to untreated controls
The objective of the experiment was to determine the impact of cap-adjacent 2'-O-ribose methylation on steady-state mRNA levels in a background lacking the decapping exonculease EOL-1. We depleted CMTR-1 protein, which is the main enzyme responsible for of cap-adjacent 2'-O-ribose methylation in C. ...
ORGANISM(S): Caenorhabditis elegans 
2026-03-05 | E-MTAB-16687 | biostudies-arrayexpress
TranscriptomicsC. elegans : Control vs. Chlorpyrifos and Diazinon treatments at 24oC
This SuperSeries is composed of the following subset Series: GSE24229: C. elegans : Control vs. Chlorpyrifos (0.5mg/l) treatment GSE24230: C. elegans : Control vs. Diazinon (0.5mg/l) treatment GSE24254: C. elegans : Control vs. Chorpyrifos (0.5mg/l) + Diazinon (1 mg/l) treatment Refer to individual ...
ORGANISM(S): Caenorhabditis elegans 
2011-07-31 | E-GEOD-24257 | biostudies-arrayexpress
GenomicsHi-C profiling of B-cell progenitors from Erg KO and WT mice
Hi-C profiling of B-cell progenitors from Erg KO and WT mice
PRJNA550444 | ENA
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