Sn - OmicsDI

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Unknown (22816)
Transcriptomics (880)
Genomics (513)
Proteomics (496)
Metabolomics (393)
Other (25)
Methylation profiling (9)
Clinical (7)
Models (6)
Multiomics (2)

Organisms

Homo sapiens (490)
Mus musculus (257)
Schizosaccharomyces pombe (42)
Escherichia coli (28)
Rattus norvegicus (28)
Arabidopsis thaliana (23)
Drosophila melanogaster (21)
Saccharomyces cerevisiae (15)
Streptomyces coelicolor (12)
Sus scrofa (11)
Apostichopus japonicus (4)
Moraxella catarrhalis (4)
Medicago truncatula (4)
Zea mays (4)
Triticum aestivum (4)
Oryza sativa (4)
Phytophthora infestans (3)
Oryza sativa Japonica Group (3)
Caenorhabditis elegans (3)
Candida albicans (3)
Nicotiana benthamiana (3)
synthetic construct (3)
Embryophyta (2)
Macrobrachium nipponense (2)
Staphylococcus xylosus (2)
Salmonella enterica (2)
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Macaca fascicularis (2)
Bacillus anthracis (2)

Organisms

Homo sapiens (132)
Mus musculus (100)
Rattus norvegicus (22)
freshwater metagenome (12)
Saccharomyces cerevisiae (5)
Drosophila melanogaster (4)
Actinacidiphila reveromycinica (2)
Chlorocebus sabaeus (2)
rat gut metagenome (2)
Oryza sativa (2)
soil metagenome (2)
Arabidopsis thaliana (2)
rhizosphere metagenome (2)
Sparganium eurycarpum (1)
Streptococcus (1)
Leishmania major (1)
Pseudomonas aeruginosa (1)
Oscarella carmela (1)
Hydrogenobaculum sp. SN (1)
Idiomarina aquatica (1)
Aliirhizobium wenxiniae (1)
Torulaspora delbrueckii (1)
mosquito metagenome (1)
Primates (1)
Aquabacter cavernae (1)
plastic metagenome (1)
Staphylococcus nepalensis (1)
Taiwanofungus camphoratus (1)
Anopheles funestus (1)
Thlaspi arvense (1)

Repository

biostudies-arrayexpress (745)
ENA (414)
pride (381)
MetabolomicsWorkbench (248)
geo (223)
MetaboLights (142)
MassIVE (61)
EGA (38)
jPOST (19)
iProX (18)
PanoramaPublic (10)
LINCS (7)
BioModels (5)
GNPS (3)
PAXDB (3)
PeptideAtlas (3)
GPMDB (2)
ExpressionAtlas (1)
Cell Collective (1)
NODE (1)

Tissue

Blood (67)
Cultured cells (28)
Liver (14)
Bacterial cells (12)
Feces (10)
Lung (7)
Macrophages (7)
Muscle (7)
Urine (7)
Brain (7)
Plant (6)
Cells (5)
Unspecified (5)
Eye tissue (5)
Kidney (4)
Spleen (4)
Plasmodium cells (3)
Larvae (3)
Stem cells (3)
Yeast cells (3)
Cecum (3)
Mesenteric lymph (2)
Maize kernel (2)
Parasite (2)
Fibroblast cells (2)
Bone marrow (2)
Intestine (2)
Heart (2)
Hep G2 cells (2)
Cerebrospinal fluid (2)

Disease

Cancer (27)
Malaria (25)
Parkinson's disease (11)
Diabetes (10)
Colon cancer (8)
Inflammation (6)
Obesity (6)
Obesity (5)
Eye disease (4)
Fatty liver disease (4)
Neuroblastoma (3)
Asthma (3)
Sleeping sickness (3)
Ulcerative colitis (3)
Myalgic encephalomyelitis/chronic fatigue syndrome (3)
Amyotrophic lateral sclerosis (2)
Normal (2)
Colorectal Neoplasms (2)
Not Available (2)
Myasthenia gravis (seropositive patient with low thymic hyperplasia) (1)
Colorectal Carcinoma (1)
Neurologically healthy control (1)
Cancer (1)
Glioblastoma multiforme (1)
Acute myeloid leukemia (1)
Diarrhea (1)
Pancreatic Neoplasms (1)
Neoplasm Metastasis (1)
Adenocarcinoma (1)
Lung Neoplasms (1)

Technology Type

Mass Spectrometry (609)
ESI (216)
Shotgun proteomics (179)
Mass spectrometry (111)
Bottom-up proteomics (80)
Data-dependent acquisition (51)
Affinity purification coupled with mass spectrometry proteomics (35)
Data-independent acquisition (28)
SWATH MS (27)
Mass spectrometry assay (25)
Gel-based experiment (22)
NMR (20)
Chemical cross-linking coupled with mass spectrometry proteomics (18)
EI (12)
Top-down proteomics (8)
P100 (7)
Mass spectrometry (7)
NMR spectroscopy (6)
All-ion fragmentation (4)
HDMSE (3)
SRM/MRM (3)
NMR spectroscopy assay (2)
ION_TORRENT, Ion Torrent Proton (1)
AB SOLiD System 3.0 (1)
Illumina HiSeq 2000 (1)
Other (1)
Unspecified (1)
APCI (1)
Proteogenomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Illumina NovaSeq 6000 (29)
Illumina HiSeq 2000 (11)
NextSeq 500 (11)
Illumina HiSeq 2500 (9)
Illumina HiSeq 4000 (8)
Axon GenePix 4000B scanning hardware (6)
Illumina MiSeq (6)
Illumina NovaSeq X (5)
PALM Robo LCM (3)
NextSeq 550 (3)
GenePix 4000A [Axon Instruments] (2)
DNA Microarray Scanner BA [Agilent Technologies] (2)
NextSeq 2000 (2)
Illumina HiSeq 1500 (2)
TruSeq stranded Total RNA kit (1)
CellRanger v2.1.0 (1)
MSI GP76 Leopard 10UE-060ES Intel Core i7-10870H/16GB/1TB SSD/RTX 3060/17.3\ (1)
Manual protocol (1)
Linux (1)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
Bioanalyzer 2200 (1)
Chromium Controller (1)
10x Genomics Chromium (1)
DNA 7500 Bioanalyzer Chips (1)
Fluidic station 450 and Affymetrix scanner 3000 (1)
GenePix 4000B scanner (1)
Illumina BeadArray Reader (1)
FS450 (1)
Illumina iScan system (1)
QIAsymphony SP (1)

Publication Date

2025 (140)
2026 (125)
2024 (123)
2023 (105)
2014 (101)
2013 (100)
2021 (84)
2010 (82)
2022 (78)
2015 (78)
2020 (74)
2012 (69)
2016 (66)
2011 (66)
2019 (59)
2018 (52)
2008 (40)
2017 (37)
2009 (36)
2005 (31)
2007 (26)
2004 (20)
2006 (17)

UNIPROT ID/AC

CSEC_STRCO (3)
Q9RD03_STRCO (3)
Q9S2B3_STRCO (3)
Q9EX14_STRCO (3)
O86590_STRCO (3)
Q93JE5_STRCO (3)
O86748_STRCO (3)
Q9S280_STRCO (3)
Q9K3Q8_STRCO (3)
O69961_STRCO (3)
Q9FBZ3_STRCO (3)
Q9RK21_STRCO (3)
Q93IZ2_STRCO (3)
O86689_STRCO (3)
Q9L1D1_STRCO (3)
Q9RDK2_STRCO (3)
Q9KYR1_STRCO (3)
Q9KZ31_STRCO (3)
Q9S2V9_STRCO (3)
Q9RKF7_STRCO (3)
Q9FCE6_STRCO (3)
Q9ADJ5_STRCO (3)
Q93RW6_STRCO (3)
Q9XA23_STRCO (3)
Q9ZBT4_STRCO (3)
Q9K4C2_STRCO (3)
Q9L2J1_STRCO (3)
Q9RKW3_STRCO (3)
Q9KYA5_STRCO (3)
Q9KY72_STRCO (3)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:30769 (30)
CHEBI:17368 (29)
CHEBI:16335 (26)
CHEBI:16737 (26)
CHEBI:16919 (26)
CHEBI:27897 (26)
CHEBI:15756 (26)
CHEBI:25017 (24)
CHEBI:26271 (24)
CHEBI:28300 (23)
CHEBI:18186 (23)
CHEBI:28044 (23)
CHEBI:18237 (23)
CHEBI:16811 (23)
CHEBI:17154 (23)
CHEBI:15428 (23)
CHEBI:32816 (22)
CHEBI:18012 (22)
CHEBI:7916 (22)
CHEBI:15741 (22)
CHEBI:15891 (22)
CHEBI:27266 (21)
CHEBI:16449 (21)
CHEBI:25094 (21)
CHEBI:30915 (21)
CHEBI:17568 (21)
CHEBI:17596 (21)
CHEBI:64563 (21)
CHEBI:17750 (20)
CHEBI:16704 (20)

Metabolite Name

Creatine (21)
Creatinine (19)
Hypoxanthine (19)
Leucine (17)
Kynurenic acid (17)
Taurine (17)
Adenosine (17)
Glutamine (17)
Xanthine (17)
Choline (16)
Proline (16)
Phenylalanine (16)
Histidine (15)
Valine (15)
Alanine (15)
Tryptophan (15)
Tyrosine (15)
Uric acid (15)
Hippuric acid (14)
Threonine (14)
Citrate (14)
Ornithine (13)
Citrulline (13)
Methionine (13)
Lysine (13)
Linoleic acid (13)
Uridine (13)
Pseudouridine (13)
Aspartate (12)
AMP (12)

First Public Date

2024 (69)
2026 (63)
2025 (52)
2014 (46)
2023 (34)
2021 (27)
2017 (26)
2020 (24)
2019 (18)
2022 (16)
2018 (16)
2015 (9)
2013 (8)
2016 (6)

Modelling Approach

Ordinary differential equation model (5)

Study status

Completed (4)
Recruiting (2)
Withdrawn (1)

Lab affiliation

ETH Zurich, Institute of Molecular Systems Biology (5)
Cold Spring Harbor Laboratory (5)
IFOM (5)
Medizinisches Proteom-Center, Medical Faculty, Ruhr-University Bochum, Bochum, Germany (4)
Proteomics (4)
The University of Melbourne (4)
Pathology - Lab & Genomic Medicine (LGM); Washington University School of Medicine (3)
Dana-Farber Cancer Institute and Harvard Medical School (3)
German Cancer Research Center (DKFZ) Cell Signaling and Metabolism Division Head (3)
Laboratory of Biotechnology of Reproduction, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, 46022 Valencia, Spain (3)
Harvard Medical School (3)
Department of Cell Biology, Harvard Medical School, Boston, MA, USA (3)
Pacific Northwest National Laboratory (3)
Laboratory of Molecular Basis of Synaptic Plasticity Centre of New Technologies, University of Warsaw (2)
Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center (2)
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (2)
Department of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth (2)
School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China (2)
Instituto de Ciencia y Tecnologia Animal Universitat Politècnica de València Valencia, Spain (2)
Program in Molecular Medicine, UMass Chan Medical School (2)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, Australia. (2)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, Australia (2)
Koç University, Department of Molecular Biology and Genetic Cell Biology Lab head (2)
Institute of Biological Chemistry, Academia Sinica, Taipei, 115201, Taiwan Institute of Biochemical Sciences, National Taiwan University, Taipei, 106319, Taiwan International Institute for Sustainability with Knotted Chiral Meta Matter (SKCM2), Hiroshima University, Hiroshima, 739-8511, Japan (2)
1.Department of Molecular Biology and Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114, USA, 2.Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA, 3.Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. (2)
Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil (2)
Florida State University College of Medicine (2)
Harvard medical school (2)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)

Keyword

Irinotecan (4)
Intraperitoneal (1)
Atorvastatin (1)
Advanced colon cancer (1)
Advanced rectal cancer (1)
Metastatic rectal cancer (1)
Lipitor (1)
Metastatic colon cancer (1)
Probiotics (1)
Prevention (1)
Drug eluting beads (1)
Pharmacogenetics (1)
Pharmacokinetics (1)
FOLFIRI (1)
Recurrent colon cancer (1)
Stage IV colon cancer (1)
Recurrent rectal cancer (1)
Stage IV rectal cancer (1)
Leucovorin (1)
Bevacizumab (1)
Fluorouracil (1)
Oxaliplatin (1)

IsPrivate

False (5)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (2)
protozoa (1)

Modification

Not available (4)
15.994915 (3)
42.010565 (2)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
788.725776 (1)
47.984744 (1)
3-dipalmitoyl-glycerol)cysteine (1)
-17.026549 (1)
57.021464 (1)

Study type

Transcription profiling by array (477)
RNA-seq of coding RNA (92)
Unknown experiment type (33)
Comparative genomic hybridization by array (19)
RNA-seq of non coding RNA (19)
ChIP-seq (17)
RNA-seq of coding RNA from single cells (16)
DNA-seq (8)
ChIP-chip by tiling array (6)
ChIP-chip by array (6)
Other (6)
Methylation profiling by array (6)
Genotyping by array (4)
Transcription profiling by SAGE (3)
Cell line - High-throughput sequencing (3)
RNAi profiling by array (3)
ScATAC-seq (3)
Methylation profiling by high throughput sequencing (3)
RIP-seq (2)
Single nucleus RNA sequencing (2)
MicroRNA profiling by array (2)
Transcription profiling by high throughput sequencing (1)
Animal - One-color microarray (1)
Human - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)

Release Date

2022 (2646)
2021 (2437)
2023 (2405)
2025 (2298)
2024 (1994)
2020 (1839)
2019 (1441)
2018 (1308)
2016 (1074)
2017 (1073)
2015 (935)
2014 (800)
2013 (549)
2012 (471)
2011 (466)
2010 (434)
2026 (335)
2009 (332)
2008 (254)
2007 (128)
2005 (90)
2006 (87)
2004 (54)
2003 (29)
2001 (25)
2002 (16)
2000 (13)
1999 (11)
1998 (10)
1997 (3)

Location

United States (3)
Slovakia (1)
Singapore (1)
South Korea (1)
Netherlands (1)

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Hydrogenobaculum sp. SN strain:SN

Hydrogenobaculum sp. SN genome sequencing

PRJNA39709 | ENA

Paenibacillus sp. SN-8-1

Paenibacillus sp. SN-8-1 Genome sequencing

PRJNA1271722 | ENA

Transcription profiling of porcine alveolar macrophages (PAM) after antibody-mediated crosslinking of sialoadhesin (Sn, Siglec-1)

In the present study, Sn expressed on primary pig macrophages was crosslinked with the anti-Sn monoclonal antibody 41D3 and the mRNA expression profiles were compared, using the Affymetrix microarray technology, to macrophages incubated with the irrelevant, isotype matched, monoclonal antibody 13D12

ORGANISM(S): Sus scrofa

2007-03-09 | E-MEXP-991 | biostudies-arrayexpress

Molecular characterization of irinotecan (SN-38) resistant human breast cancer cell lines

SN-38 resistant breast cancer cell lies (MCF-7 and MDA-MB-231) were established by stepwise increasing the concentration of SN-38. Gene expression profiling was performed on parental (sensitive) MCF-7 and parental (sensitive) MDA-MB-231 cell lines and their respective SN-38 resistant cell lines. For...

ORGANISM(S): Homo sapiens

2016-01-05 | E-MTAB-3224 | biostudies-arrayexpress

Aliirhizobium wenxiniae strain:SN-8-1

Rhizobium wenxiniae strain: SN-4-17 Genome sequencing

PRJNA1438419 | ENA

Streptococcus strain:SN-1

Whole genome sequence of the novel Streptococcus species strain SN-1

PRJDB15467 | ENA

Aquabacter cavernae strain:Sn-9-2

Aquabacter cavernae strain:Sn-9-2 Genome sequencing and assembly

PRJNA509122 | ENA

Actinacidiphila reveromycinica strain:SN-593

Streptomyces reveromyceticus SN-593 Genome Project

PRJDB6258 | ENA

Root transcriptome of the tsn1 tsn2 double mutant

au06-03_tsn_fj - tsn_fj - Root transcriptome of the tsn1 tsn2 double mutant - Comparison of a tsn1 tsn2 double mutant line (A10.9.3- or A13.3.11-) and an isogenic line complemented by TSN2 (A10.9.5) or TSN1 (A13.3.2) Keywords: gene knock in (transgenic),gene knock out 6 dye-swap - CATMA arrays

ORGANISM(S): Arabidopsis thaliana

2009-04-08 | E-GEOD-15559 | biostudies-arrayexpress

Limosilactobacillus fermentum strain:SN-1

Limosilactobacillus fermentum strain:SN-1 Genome sequencing

PRJNA1192039 | ENA

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