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TranscriptomicsU87MG Decoded: The Genomic Sequence of a Cytogenetically Aberrant Human Cancer Cell Line
U87MG is a commonly studied grade IV glioma cell line that has been analyzed in at least 1,700 publications over four decades. In order to comprehensively characterize the genome of this cell line and to serve as a model of broad cancer genome sequencing, we have generated greater than 30x genomic s...
ORGANISM(S): Homo sapiens 
2010-01-24 | E-GEOD-19986 | biostudies-arrayexpress
UnknownTPES: tumor purity estimation from SNVs.
Not available
S-EPMC6821153 | biostudies-literature
TranscriptomicsDetection of single nucleotide variations in expressed exons of the human genome using RNA-Seq
Whole genome re-sequencing is still a costly method to detect genetic mutations that lead to altered forms of proteins and may be associated with disease development. Since the majority of disease-related single nucleotide variations (SNVs) are found in protein-coding regions, we propose to identify...
ORGANISM(S): Homo sapiens 
2009-06-15 | E-GEOD-16190 | biostudies-arrayexpress
GenomicsComparison of cytosine base editors and development of the BEable-GPS database for targeting pathogenic SNVs
Comparison of cytosine base editors and development of the BEable-GPS database for targeting pathogenic SNVs
PRJNA563572 | ENA
UnknownUsing bioinformatics to predict the functional impact of SNVs.
Not available
S-EPMC3105482 | biostudies-literature
GenomicsSingle nucleotide variants (SNVs) associated with cutaneous melanoma (CM) risk and prognosis
Single nucleotide variants (SNVs) associated with cutaneous melanoma (CM) risk and prognosis
PRJNA533122 | ENA
UnknownTOP-SECRETS enables Cas9 nucleases to discriminate SNVs outside of PAMs.
Not available
S-EPMC12247990 | biostudies-literature
UnknownSpatialSNV: A novel method for identifying and analyzing spatially resolved SNVs in tumor microenvironments.
Not available
S-EPMC12166308 | biostudies-literature
UnknownSCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data.
Not available
S-EPMC8459565 | biostudies-literature
TranscriptomicsTranscriptome sequencing of human hepatocellular carcinoma
Deep high-throughput transcriptome sequencing (RNA-seq) performed on 3 pairs of matched tumor and adjacent non-tumorours (NT) tissues from HCC patients of Chinese origin generated 183.6-million reads that could be aligned. We discovered a number of differentially expressed genes and multiple types o...
ORGANISM(S): Homo sapiens 
2013-04-02 | E-GEOD-33294 | biostudies-arrayexpress
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