Solanaceae - OmicsDI

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Unknown (950)
Genomics (206)
Transcriptomics (24)
Proteomics (13)
Metabolomics (8)
Other (1)

Organisms

Solanum lycopersicum (15)
Solanum tuberosum (10)
Aerococcus urinae NBRC 15544 = CCUG 36881 (10)
Andropogon gerardi (10)
Bacteria (10)
Bartonella quintana JK 31 (10)
Canis lupus familiaris (10)
Cnidaria (10)
Ectopseudomonas oleovorans CECT 5344 (10)
Ensifer adhaerens (10)
Halictus scabiosae (10)
Human immunodeficiency virus 1 (10)
Mesocricetus auratus (10)
Miscanthus x giganteus (10)
Mus musculus (10)
Nicotiana tabacum (8)
Capsicum annuum (8)
Petunia x hybrida (7)
Solanum virginianum (6)
Nicotiana benthamiana (6)
Solanum phureja (2)
Solanum melongena (1)
Nicotiana sylvestris (1)
Petunia integrifolia subsp. inflata (1)
Petunia axillaris (1)
Lycium ruthenicum (1)
Lycium barbarum (1)
Withania somnifera (1)
Phytophthora infestans (1)
cellular organisms (1)

Organisms

Solanum lycopersicum (13)
Lycium ruthenicum (7)
Solanum virginianum (7)
Withania somnifera (6)
Homo sapiens (5)
Nicotiana tabacum (4)
Solanaceae (3)
Solanum tuberosum (3)
Capsicum annuum (3)
Petunia x hybrida (2)
Nicotiana benthamiana (2)
Lycium barbarum (2)
unidentified (2)
soil metagenome (2)
Moniliophthora perniciosa (1)
Solanum carolinense (1)
Meloidogyne artiellia (1)
Phelipanche ramosa (1)
Ralstonia pseudosolanacearum CaRs-Mep (1)
Salpiglossis sinuata (1)
Datura stramonium (1)
Solanum macrocarpon (1)
Physalis peruviana (1)
Dickeya sp. ws52 (1)
Solanum phureja (1)
Petunia altiplana (1)
Meloidogyne paranaensis (1)
Solanum sisymbriifolium (1)
Solanum muricatum (1)
Datura inoxia (1)

Repository

ENA (203)
geo (23)
pride (10)
biostudies-arrayexpress (5)
GNPS (4)
MetaboLights (4)
MassIVE (2)
jPOST (1)

Tissue

Leaf (5)
Plant cell (1)
Plant reproductive system (1)
Seed (1)
Seedling (1)

Technology Type

Mass Spectrometry (10)
Shotgun proteomics (9)
Mass spectrometry (2)
NMR spectroscopy assay (1)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Data-independent acquisition (1)
HDMSE (1)

Instrument Platform

Exactive Orbitrap focus (Thermo Fisher Scientific) (2)
Orbitrap Exploris 120 (2)
Liquid Chromatography MS - positive - reverse phase (2)
MaXis (1)
MicrOTOF-Q II (1)
Nuclear Magnetic Resonance (NMR) - - - Bruker (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2025 (7)
2023 (5)
2016 (5)
2007 (5)
2008 (3)
2021 (3)
2024 (3)
2022 (3)
2014 (2)
2009 (2)
2020 (2)
2018 (2)
2019 (2)
2015 (1)
2011 (1)
2005 (1)
2026 (1)
2013 (1)

CHEBI ID

CHEBI:167209 (2)
CHEBI:166892 (2)
CHEBI:167212 (2)
CHEBI:133834 (2)
CHEBI:67236 (2)
CHEBI:67240 (2)
CHEBI:16112 (2)
CHEBI:30566 (1)
CHEBI:17992 (1)
CHEBI:29987 (1)
CHEBI:22660 (1)
CHEBI:18186 (1)
CHEBI:28757 (1)
CHEBI:37684 (1)
CHEBI:26986 (1)
CHEBI:17234 (1)
CHEBI:28300 (1)
CHEBI:24898 (1)
CHEBI:25017 (1)
CHEBI:28044 (1)
CHEBI:18123 (1)
CHEBI:27266 (1)
CHEBI:6650 (1)
CHEBI:18066 (1)
CHEBI:18012 (1)
CHEBI:22653 (1)
CHEBI:16449 (1)
CHEBI:15354 (1)
CHEBI:30769 (1)

Metabolite Name

RGHGL (2)
Aglycone (2)
Lyciumoside II (2)
Attenoside (2)
Lyciumoside IV (2)
Chlorogenic acid (2)
Lyciumoside I (2)
M169T278 (1)
M113T301 (1)
M181T45 (1)
M304T312 (1)
M177T267 (1)
M579T440 (1)
M233T368 (1)
M126T429 (1)
M379T346 (1)
M325T502 (1)
M139T81 (1)
M193T269 (1)
M121T159 (1)
M337T464 (1)
M391T354 (1)
M299T325 (1)
M210T479 (1)
M357T433 (1)
M211T439 (1)
M220T395 (1)
M147T435 (1)
M152T444 (1)
M189T439 (1)

First Public Date

2013 (32)
2024 (21)
2026 (19)
2025 (19)
2023 (19)
2022 (16)
2021 (15)
2020 (14)
2014 (13)
2019 (11)
2018 (10)
2016 (9)
2015 (3)
2017 (2)

Classification

viruses (1)
bacteria (1)

Study type

Transcription profiling by array (3)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (119)
2023 (93)
2024 (90)
2021 (83)
2020 (76)
2025 (75)
2019 (60)
2017 (51)
2016 (47)
2018 (46)
2014 (43)
2015 (36)
2013 (27)
2010 (21)
2012 (18)
2011 (17)
2008 (15)
2009 (8)
2026 (8)
2007 (6)
2006 (4)
2005 (4)
2004 (2)
2003 (2)
2001 (2)
2002 (1)
2000 (1)

Lab affiliation

Forschungszentrum Juelich GmbH ZEA-3 Analytics (2)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Centre de recherche et d’innovation sur les végétaux, Université Laval, Québec, Canada (1)
College of Horticulture, Hunan Agricultural University (1)
Huazhong Agricultural University,key laboratory of horticultural plant biology,China Hubei (1)
Research group Proteomics, CEITEC-MU, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic (1)
Tobacco Research Institute of CAAS (1)
Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Laboratório de Fisiologia e Bioquímica de Microrganismos (LFBM), Av. Alberto Lamego, 2000, Campos dos Goytacazes, RJ - CEP: 28013-602 (1)

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Solanaceae

Solanaceae Trichome RNA-seq analysis

PRJNA263038 | ENA

Solanaceae

Solanaceae Genome sequencing

PRJNA254702 | ENA

Solanaceae

Exploration of Solanaceae pathogen recognition genes rich regions

PRJNA323537 | ENA

solanaceae

Resistance gene enrichment sequencing (RenSeq) of Solanaceae

PRJNA496490 | ENA

SOLANACEAE

Tradeoffs Involved in Alkaloid Evolution in the Solanaceae. (Raw sequence reads)

PRJNA1070281 | ENA

Solanaceae species

Solanaceae genome sequencing and assembly

PRJNA839598 | ENA

Solanaceae comparative gene expression profiling

PRJNA93511 | ENA

Solanaceae comparative gene expression profiling

PRJNA101167 | ENA

Solanaceae

Solanaceae Pericarp Transcriptomes

PRJNA646747 | ENA

Solanaceae comparative gene expression profiling

Six different Solanaceae species, Potato (Solanum tubersosum), Tomato (Lycopersicum esculentum), Pepper (Capsicum annuum), Tobacco (Nicotiana tabaccum), Petunia and Nicotiana benthiamana were grown at 25C, 16h light and 8h darkness. Mature leaves were harvested after 4-6 weeks. RNA was isolated usin...

ORGANISM(S): Solanum tuberosum Solanum lycopersicum Nicotiana tabacum Capsicum annuum Nicotiana benthamiana Petunia x hybrida

2005-10-03 | GSE3380 | GEO

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