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MetabolomicsMetabolic differences in ripening of Solanum lycopersicum 'Ailsa Craig' and three monogenic mutants
Application of mass spectrometry enables the detection of metabolic differences between groups of related organisms. Differences in the metabolic fingerprints of wild-type Solanum lycopersicum and three monogenic mutants, ripening inhibitor (rin), non-ripening (nor) and Colourless non-ripening (Cnr)...
2014-02-07 | MTBLS36 | MetaboLights
MetabolomicsLipopolysaccharides from Ralstonia solanacearum induce a broad metabolomic response in Solanum lycopersicum

Ralstonia solanacearum, one of the most destructive crop pathogens worldwide, causes bacterial wilt disease in a wide range of host plants. The major component of the outer membrane of Gram-negative bacteria, lipopolysaccharides (LPS), has been shown to function as elicitors of plant defense lead...

2023-08-08 | MTBLS7324 | MetaboLights
MetabolomicsMetabolomic responses of Solanum lycopersicum to Tuta absoluta infestation and TaCRVP effector expression
This study presents the metabolomic profiling of Solanum lycopersicum in response to feeding by the herbivorous insect Tuta absoluta and the overexpression of its salivary effector, TaCRVP. To elucidate how this effector manipulates host immunity at the metabolic level, we performed untargeted LC-MS...
2026-05-18 | MTBLS14509 | MetaboLights
MetabolomicsMetabolic differences in ripening of Solanum lycopersicum 'Ailsa Craig' and three monogenic mutants (alternative assay to MTBLS36)
The purpose of this study was to highlight metabolic differences between different cultivars of tomato through development and ripening. Application of mass spectrometry enables the detection of metabolic differences between groups of related organisms. Differences in the metabolic fingerprints of w...
2017-10-18 | MTBLS73 | MetaboLights
MetabolomicsMetabolomics of Solanum lycopersicum infected by Phytophthora infestans leads to Late blight detection and reveals metabolic differences in infection times
Tomato crops suffer attacks of various pathogens that cause large production losses. Late blight caused by Phytophthora infestans is a devastating disease in tomatoes because of its difficultly to control. Here, we applied metabolomics based on liquid chromatography–mass spectrometry (LC-MS) and met...
2019-01-24 | MTBLS618 | MetaboLights
ProteomicsSpectral library of Solanum lycopersicum for SWATH-MS
A spectral library was built for Solanum lycopersicum. The spectral library allows reproducible quantification for thousands of peptides per SWATH-MS analysis. Proteins from Solanum lycopersicum pericarp were digested with trypsin using in-gel digestion and the peptides were fractionated by high-pH...
ORGANISM(S): Solanum Lycopersicum (ncbitaxon:4081) 
2017-05-11 | MSV000081074 | MassIVE
TranscriptomicsExpression data from various tomato plant tissues
Gene-to-gene coexpression analysis is a powerful approach to infer function of uncharacterized genes. To perform non-targeted coexpression analysis of tomato genes, we collected a developmental gene expression dataset using various tissues of tomato plant. Expression data are collected from 24 diffe...
ORGANISM(S): Solanum lycopersicum 
2010-02-21 | E-GEOD-19326 | biostudies-arrayexpress
TranscriptomicsEnhanced photorespiratory and TCA pathways by elevated CO2 to manage ammonium nutrition in tomato leaves
This work aims to study wether the increment of the atmospheric carbon dioxide (CO2) concentration, in the context of climate change, will potentially allow plants to better face ammonium nutrition. Tomato (Solanum lycopersicum L.) plants were grown for 4 week with 15 mM of nitrogen, supplied as nit...
ORGANISM(S): Solanum lycopersicum 
2024-11-29 | E-MTAB-14587 | biostudies-arrayexpress
TranscriptomicsThe composition and function of chaperone networks in Solanum lycopersicum explored by transcriptome sequencing and microarray meta-analysis
Heat shock proteins (Hsps) are molecular chaperones primarily involved in maintenance of protein homeostasis. Their function has been best characterized in heat stress (HS) response during which Hsps are transcriptionally controlled by heat stress transcription factors (Hsfs). The role of Hsfs and H...
ORGANISM(S): Solanum lycopersicum 
2014-08-01 | E-GEOD-56611 | biostudies-arrayexpress
TranscriptomicsmicroRNA-target RNA pairs revealed by Parallel analysis of RNA ends in Solanum lycopersicum
Solanum lycopersicum RNA degradome sequencing Isolated polyadenylated RNA from total RNA extracts of Solanum lycopersicum, were ligated to 5'-adapter that includes an MmeI recognition site. The ligated products were purified again, reverse transcribed and cleaved with MmeI. The 5' fragments were pur...
ORGANISM(S): Solanum lycopersicum 
2012-08-29 | E-GEOD-22236 | biostudies-arrayexpress
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