Song Yu Y - OmicsDI

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Unknown (3759)
Proteomics (106)
Genomics (22)
Transcriptomics (16)
Metabolomics (15)
Models (2)

Organisms

Homo sapiens (55)
Schizophyllum commune H4-8 (50)
Mycobacterium tuberculosis SP7 (50)
Oryza sativa Japonica Group (50)
Candidatus Endoriftia persephonae (50)
Mycobacterium tuberculosis SP10 (50)
Mycobacterium tuberculosis SP13 (50)
Mycobacterium tuberculosis SP22 (50)
Chlamydomonas reinhardtii (50)
Pyricularia oryzae P131 (50)
Enterococcus mundtii CRL35 (50)
Oncorhynchus tshawytscha (50)
Pseudomonas canadensis (50)
Mus musculus (20)
Rattus norvegicus (3)
cellular organisms (2)
Anser cygnoides (2)
Yersinia pestis CO92 (2)
Rhodococcus opacus (1)
Citrus trifoliata (1)
Oryza sativa (1)
Sus scrofa (1)
Oestrus ovis (1)
Populus trichocarpa (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Solanum lycopersicum (1)
Saccharomyces cerevisiae (1)
Rattus rattus (1)
Oryctolagus cuniculus (1)
Arabidopsis thaliana (1)

Repository

iProX (53)
pride (50)
biostudies-arrayexpress (24)
MetaboLights (15)
EGA (14)
MassIVE (3)
BioModels (2)

Tissue

Cell culture (12)
Plant cell (5)
Leaf (4)
Liver (4)
Blood (4)
Smooth muscle cell (3)
Shoot (3)
Kidney cell (2)
Urine (2)
Brain (2)
Root (2)
Whole body (2)
Spleen (2)
CARO_0000000 (1)
Hemocyte (1)
Anther (1)
Sperm (1)
Spermatozoon (1)
Keratinocyte (1)
Bone marrow (1)
Blood plasma (1)
HeLa cell (1)
Hepatocyte (1)
Permanent cell line cell (1)
Epithelial cell (1)
Kidney (1)
Saliva (1)
Blood cell (1)
T cell (1)

Disease

Kidney cancer (3)
Mammary tumor (1)
Breast cancer (1)
Lymphoma (1)
Neuroblastoma (1)
Liver cancer (1)
Disease free (1)

Technology Type

Mass Spectrometry (50)
Shotgun proteomics (20)
Mass spectrometry (14)
Bottom-up proteomics (6)
Proteogenomics (4)
Data-independent acquisition (4)
Gel-based experiment (4)
SWATH MS (3)
Data-dependent acquisition (3)
Top-down proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (7)
Q Exactive (2)
Liquid Chromatography MS - negative (2)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - positive (2)
Agilent 7890A GC with 5975C inert XL MSD (1)
LTQ Orbitrap Velos (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (19)
2024 (16)
2023 (14)
2021 (14)
2022 (11)
2019 (8)
2020 (6)
2016 (5)
2014 (5)
2013 (5)
2026 (5)
2015 (3)
2011 (2)
2010 (2)
2012 (1)
2009 (1)
2008 (1)
2005 (1)
2017 (1)
2018 (1)

UNIPROT ID/AC

P17676 (2)
P15260 (2)
P67775 (2)
P62136 (2)
P08887 (2)
P40189 (2)
P01579 (2)
O14543 (2)
P42224 (2)
P40763 (2)
O60674 (2)
P05231 (2)
P01112 (2)
P04049 (2)
Q02750 (2)
P28482 (2)
Q07889 (2)
Q06124 (2)
P62993 (2)
O15524 (2)
P23458 (2)

CHEBI ID

CHEBI:16467 (7)
CHEBI:17509 (7)
CHEBI:15756 (7)
CHEBI:16704 (7)
CHEBI:17596 (7)
CHEBI:16870 (6)
CHEBI:28842 (6)
CHEBI:17295 (6)
CHEBI:17015 (6)
CHEBI:18347 (6)
CHEBI:16015 (6)
CHEBI:7916 (6)
CHEBI:17750 (6)
CHEBI:17568 (6)
CHEBI:16040 (6)
CHEBI:16335 (6)
CHEBI:16750 (6)
CHEBI:15741 (6)
CHEBI:17562 (6)
CHEBI:28931 (5)
CHEBI:18183 (5)
CHEBI:30805 (5)
CHEBI:32365 (5)
CHEBI:16914 (5)
CHEBI:27823 (5)
CHEBI:30763 (5)
CHEBI:16857 (5)
CHEBI:48131 (5)
CHEBI:16828 (5)
CHEBI:17115 (5)

Metabolite Name

Uridine (6)
Betaine (4)
Palmitic acid (4)
N-Acetyl-L-phenylalanine (4)
Linoleic acid (4)
Uracil (4)
L-Proline (4)
L-Asparagine (4)
Guanosine (4)
2'-Deoxyinosine (3)
N-Acetyl-D-glucosamine (3)
Phthalic acid (3)
Picolinic acid (3)
L-Norleucine (3)
Gluconic acid (3)
Succinic acid (3)
Allantoin (3)
4-Hydroxybenzoic acid (3)
Cis-4-Hydroxy-D-proline (3)
Fumaric acid (3)
Taurocholic acid (3)
4-Hydroxybenzaldehyde (3)
Pimelic acid (3)
Stearic acid (3)
3-Hydroxybutyric acid (3)
Sebacic acid (3)
Isocitric acid (3)
Urocanic acid (3)
Pentadecanoic Acid (3)
Dodecanoic acid (3)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (5)
ChIP-seq (4)
Methylation profiling by high throughput sequencing (4)
Genotyping by array (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (625)
2024 (525)
2022 (524)
2023 (492)
2021 (400)
2020 (292)
2019 (163)
2018 (156)
2017 (130)
2016 (112)
2015 (86)
2026 (80)
2014 (60)
2013 (45)
2012 (30)
2011 (27)
2010 (15)
2009 (6)
2007 (5)
2008 (3)
2005 (2)
2003 (2)
2006 (1)
2004 (1)
1999 (1)

Lab affiliation

Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (4)
Tsinghua University, China (4)
Yazhouwan National Laboratory, Sanya 572024, China (3)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, 510060, China (3)
Shandong Academy of Agricultural Sciences, Jinan, Shandong, China (2)
NHC Key Laboratory of Diagnosis and Treatment on Brain Functional Diseases, The First Affiliated Hospital of Chongqing Medical University, 1 Youyi Road, Yuzhong District, Chongqing 400016, China; (1)
Department of Biochemistry and Biophysics University of North Carolina Chapel Hill, NC USA (1)
Tianjin university of Traditional Chinese Medicine, Tianjin 300193, China (1)
Department of Hepatology, Tianjin Medical University General Hospital, Tianjin, China (1)
Affiliated hospital of Nantong university (1)
Nanjing Agricultural University, Binjiang Campus (1)
Laboratory of Molecular Pharmacology and Drug Discovery, Institute of Chinese Materia Medica, The Fourth Clinical Medical College, Guangzhou University of Chinese Medicine, Shenzhen, Guangdong 518033, China (1)
Biochemistry and Structural Biology Greehey Children's Cancer Research Institute University of Texas Health at San Antonio United States (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 5Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 8Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, China. (1)
Jining First People's Hospital Affiliated to Shandong First Medical University (1)
Cheeloo Medical College, Shandong University, Jinan, Shandong, China (1)
Departments of Critical Care Medicine, the First Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, 150001, China. (1)
Department of Pathophysiology, School of Basic Medicine, Key Laboratory of Ministry of Education of China for Neurological Disorders, Tongji Medical College, Huazhong University of Science and Technology (1)
Key Laboratory of Human Disease Comparative Medicine, Chinese Ministry of Health, Beijing Key Laboratory for Animal Models of Emerging and Remerging Infectious Diseases, Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences and Comparative Medicine Center, Peking Union Medical College, Beijing, 100021 China. (1)
Department of Human Anatomy, Histology, and Embryology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education) and State Key Laboratory of Natural and Biomimetic Drugs,Peking University Health Science Center, Beijing 100191, China. (1)
Department of biochemistry, Zhongshan school of medicine, Sun Yat-sen University,China (1)
Beijing University of Chinese Medicine, School of Traditional Chinese Medicine, Attending Physician, Assistant Researcher (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang, China, 310027 (1)
Proteas Bioanalytics (1)
Shanghai Institute for Materia Medica (1)
Department of Medicine, UF Health Cancer Center, University of Florida, Gainesville, FL 32610, USA. (1)
HKBU (1)
Laboratory for Functional Glycomics, College of Life Sciences, Northwest University (1)

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DNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes

Peripheral blood leukocytes are the most commonly used surrogates to study epigenome-induced risk and epigenomic response to disease related stress. We considered the hypothesis that the TET enzyme catalyzed hydroxymethylation of 5mC to 5hmC might vary among peripheral blood leukocytes and reflect t...

ORGANISM(S): Homo sapiens

2016-07-05 | E-GEOD-70519 | biostudies-arrayexpress

Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine

We explored the hypothesis that adipose tissue contains epigenetically distinct subpopulations of adipocytes that are differentially potentiated to record cellular memories of their environment. Adipocytes are large, fragile, and technically difficult to efficiently isolate and fractionate. We devel...

ORGANISM(S): Sus scrofa

2016-07-20 | E-GEOD-73684 | biostudies-arrayexpress

Differentially expressed proteins between WT Y. pestis and ΔhmwC

ORGANISM(S): Yersinia Pestis Co92

PXD042928 |

Effect of different drying temperatures on the rehydration of the fruiting bodies of Yu Muer (Auricularia cornea) and screening of browning inhibitors.

Not available

S-EPMC7684618 | biostudies-literature

Protection by Jia-Ga-Song-Tang from Alcohol-induced Liver and Intestines damage

The effects of JGST in the liver of ALD mice were investigated by TMT proteomic analysis.

ORGANISM(S): Mus Musculus

2022-06-28 | PXD034952 |