Sorbitol - OmicsDI

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Metabolomics (421)
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Corynebacterium glutamicum ATCC 13032 (2)
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Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)

Repository

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Tissue

Blood (70)
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Yeast cells (5)
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Bone (1)
Culture media (1)

Disease

Cancer (31)
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Diabetes (8)
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COPD (3)
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Antibiotic resistance (2)
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Neoplasms (1)
Alopecia (1)
Alzheimers disease (1)
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Autism (1)
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Friedreichs Ataxia (1)
Genetic disease (1)

Technology Type

Mass Spectrometry (386)
ESI (180)
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API (2)
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MALDI (1)
NMR (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (40)
Liquid Chromatography MS - negative - reverse phase (36)
Gas Chromatography MS - positive (19)
Gas Chromatography MS - (17)
Liquid Chromatography MS - positive - reverse-phase (15)
Liquid Chromatography MS - negative - reverse-phase (13)
Liquid Chromatography MS - alternating - hilic (11)
Liquid Chromatography MS - negative - hilic (11)
Illumina HiSeq 2500 (7)
Illumina HiSeq 4000 (6)
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5975C Series GC/MSD (Agilent) (5)
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Thermo Scientific Orbitrap Fusion Lumos Mass Spectrometer (1)

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2026 (55)
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2005 (1)
2004 (1)
2003 (1)

CHEBI ID

CHEBI:1 (1)
CHEBI:10059 (1)
CHEBI:10066 (1)
CHEBI:10067 (1)
CHEBI:10078 (1)
CHEBI:1013 (1)
CHEBI:10131 (1)
CHEBI:1021 (1)
CHEBI:1022 (1)
CHEBI:10231 (1)
CHEBI:10232 (1)
CHEBI:10246 (1)
CHEBI:10269 (1)
CHEBI:10270 (1)
CHEBI:10296 (1)
CHEBI:10298 (1)
CHEBI:10300 (1)
CHEBI:10343 (1)
CHEBI:10350 (1)
CHEBI:10375 (1)
CHEBI:10380 (1)
CHEBI:10428 (1)
CHEBI:10433 (1)
CHEBI:104361 (1)
CHEBI:10489 (1)
CHEBI:10490 (1)
CHEBI:10491 (1)
CHEBI:10492 (1)
CHEBI:10493 (1)
CHEBI:10494 (1)

Metabolite Name

Sorbitol (90)
Uracil (65)
Uridine (65)
Xanthine (61)
Adenosine (60)
Citric acid (60)
Taurine (59)
Hypoxanthine (58)
Succinic acid (58)
Adenine (57)
Guanosine (57)
Inosine (57)
Pantothenic acid (57)
Creatinine (55)
Ornithine (54)
Pyroglutamic acid (54)
Sucrose (53)
L-Tryptophan (52)
Citrulline (51)
Mannitol (51)
Thymine (51)
L-Valine (50)
Uric acid (50)
Creatine (49)
Glutaric acid (49)
L-Proline (49)
Dodecanoic acid (48)
Fumaric acid (48)
Guanine (48)
L-Threonine (48)

First Public Date

2024 (43)
2014 (24)
2026 (15)
2025 (15)
2023 (15)
2022 (14)
2018 (11)
2019 (10)
2020 (9)
2013 (7)
2016 (6)
2021 (5)
2017 (5)
2015 (3)

Modelling Approach

Constraint-based model (4)

Study status

Not provided (1)

Lab affiliation

David H. Koch Institute for Integrative Cancer Research Howard Hughes Medical Institute Massachusetts Institute of Technology Cambridge, MA 02139, USA (6)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (6)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
LMU Munich Plant Biochemistry and Physiology, Germany (3)
Cryobiofrontier Research Center, Iwate University, Japan (2)
Department of Proteomics and Signal Transduction, Systems Biology of Membrane Trafficking Research Group, Max-Planck Institute of Biochemistry, Martinsried, Germany (2)
EDyP (2)
Molecular Genetics RPTU Kaiserslautern (2)
Molecular Plant Biology, Department of Biochemistry, University of Turku, Finland (2)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (1)
1 Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 2 Center for Plant Biology, Purdue University, West Lafayette, IN 3 Department of Biological Sciences, Purdue University, West Lafayette, IN (1)
1. Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA. 2. Center for Plant Biology, Purdue University, West Lafayette, IN, USA. 3. Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. (1)
1. Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037, USA 2. Integrative Oceanography Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA (1)
1Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA. 2Center for Plant Biology, Purdue University, West Lafayette, IN, USA. 3Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany (1)
Biochemistry & Functional Proteomics, Institute of Biology II, University of Freiburg, Freiburg, Germany (1)
Biochemistry & Molecular Biology Department and Plant Resilience Institute, Michigan State University (1)
Biochemistry, Wageningen University (1)
CGSI - University of Wisconsin Madison. Sussman lab. (1)
CSSB Centre for Structural Systems Biology c/o Deutsches Elektronen-Synchrotron DESY Notkestraße 85, Building 15 D-22607 Hamburg (1)
Carnegie Mass Spec Facility (1)
Carnegie Mass Spectrometry Facility (1)
Center for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea (1)
Center for Genomic Regulation, 08003 Barcelona, Spain (1)
Center for Genomic Science Innovation, University of Wisconsin - Madison (1)
Center for Systems Biology and Molecular Medicine Yenepoya Research Centre Yenepoya (Deemed to be University) University Road, Deralakatte Mangalore 575018, India (1)
Centre for Infectious Diseases, Heidelberg University Hospital, Heidelberg, Germany (1)
Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Braga, Portugal (1)
Chromosome dynamics and genome stability, Institute of Epigenetics and Stem Cells, Helmholtz Zentrum München, Feodor-Lynen-Strasse 21, 81377 München, Germany (1)

Keyword

Bowel activity (1)
Gum chewing (1)
Gynecological malignancies (1)
Postoperative (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (3)

Submitter Keywords

Not Peer Reviewed (1)

Classification

bacteria (48)
protozoa (15)
fungi (9)

Modification

15.994915 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
57.021464 (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (83)
RNA-seq of coding RNA (38)
ChIP-seq (25)
ChIP-chip by tiling array (10)
Other (9)
Comparative genomic hybridization by array (8)
Transcription profiling by tiling array (3)
DNA-seq (3)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
MNase-seq (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Trajectory (1)
ChIP-chip by array (1)
Ribo-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Interventional (1)

Release Date

2021 (95)
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2019 (62)
2020 (61)
2018 (61)
2014 (54)
2015 (52)
2013 (49)
2011 (47)
2017 (44)
2016 (37)
2010 (34)
2012 (33)
2008 (24)
2009 (20)
2007 (20)
2026 (15)
2006 (11)
2003 (9)
2005 (8)
2004 (7)
2000 (4)
2002 (3)
2001 (3)
1999 (3)
1998 (2)

Location

Turkey (1)

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Aspergillus oryzae gene expression with 1hr galactose, glucose, and sorbitol induction.

We used microarrays to find out carbon souce responsive genes of A. oryzae with 1hr induction with galactose, glucose, and sorbitol. The A.oryzae RIB40 was cultured for 24hr in glucose as a carbon source, then shifted to galactose, glucose, and sorbitol containing medium and cultured for 1hr. Two bi...

ORGANISM(S): Aspergillus oryzae RIB40

2016-06-30 | E-GEOD-76534 | biostudies-arrayexpress

Escherichia coli isolate:UZB1_contigs | breed:Prokaryotic | cultivar:Sorbitol MacConkey Agar

Escherichia coli isolate:UZB1_contigs | breed:Prokaryotic | cultivar:Sorbitol MacConkey Agar Genome sequencing and assembly

PRJNA1034941 | ENA

Escherichia coli isolate:UZB5_contigs | breed:Prokaryotic | cultivar:Sorbitol MacConkey Agar

Escherichia coli isolate:UZB5_contigs | breed:Prokaryotic | cultivar:Sorbitol MacConkey Agar Genome sequencing and assembly

PRJNA1034969 | ENA

Escherichia coli isolate:UZB6_contigs | breed:Prokaryotic | cultivar:Sorbitol MacConkey Agar

Escherichia coli isolate:UZB6_contigs | breed:Prokaryotic | cultivar:Sorbitol MacConkey Agar Genome sequencing and assembly

PRJNA1034974 | ENA

Escherichia coli isolate:UZB28_contigs | breed:Prokaryotic | cultivar:Sorbitol MacConkey Agar