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TranscriptomicsTranscription profiling of human bronchioloalveolar lavage (BAL) not used for diagnostic purposes taken from patients with LF syndrome and SOS of stage II active disease
Cells from bronchioloalveolar lavage (BAL) not used for diagnostic purpose were taken from patients with LF syndrome and SOS of stage II active disease. The SOS samples were divided in two groups by the means of CD4+-/CD8+-cell ratio < 5 or > 5, respectively. At least five samples of each group were...
ORGANISM(S): Homo sapiens 
2007-04-25 | E-RZPD-23 | biostudies-arrayexpress
Transcriptomicsepithelial-mesenchymal interaction of the breast
These 95 arrays are the basis for Figure 2 of our manuscript "An interferon-response induced by tumor-stroma interaction in a subset of human breast cancers". Abstract:Background Communication between different cell types is a cardinal feature of multi-cellular organisms and perturbations ...
ORGANISM(S): Homo sapiens 
2007-11-13 | E-GEOD-7260 | biostudies-arrayexpress
TranscriptomicsAn interferon-response induced by tumor-stroma interaction in a subset of human breast cancers
This SuperSeries is composed of the following subset Series: GSE7260: epithelial-mesenchymal interaction of the breast GSE7263: Effect of heterotypic interaction between breast cancer cell line MDA-MB231 and CCL-171 fibroblast Refer to individual Series
ORGANISM(S): Homo sapiens 
2007-11-13 | E-GEOD-7264 | biostudies-arrayexpress
TranscriptomicsMultiple tissue transcriptomic responses to Piscirickettsia salmonis in Atlantic salmon (Salmo salar)
This experiment was aimed at understanding the early transcriptional response to the salmon pathogen Piscirikettsia salmonis at 48h post infection in multiple tissues. Agilent-based microarray platform with 4 44 K probes per slide (Salar_2; Agilent Design ID:025520) oligo microarray was used in thi...
ORGANISM(S): Salmo salar 
2012-05-01 | E-MTAB-685 | biostudies-arrayexpress
UnknownPhase 3 trial of defibrotide for the treatment of severe veno-occlusive disease and multi-organ failure.
Not available
S-EPMC4817309 | biostudies-literature
TranscriptomicsRNA-seq of Bacillus subtilis (i) sigI-rsgI knock-out strain, (ii) rsgI disrupted strain, and (iii) wt strains during growth at 52°C and 37°C
The aim of the experiments was to determine the regulon of the Bacillus subtilis alternative sigma factor SigI. Biological relevance: To expand our knowledge about Bacillus subtilis transcriptional network under unfavorable conditions. Experimental workflow overview: Bacillus subtilis 168 trp+ (BaS...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2018-06-26 | E-MTAB-6314 | biostudies-arrayexpress
GenomicsCSL ChIP-seq
The expression of a large proportion of the fission yeast genome changes periodically with the cell cycle. Several key transcription factors have been identified that regulate these oscillating and interdependent waves of gene expression. However, for a significant number of cell cycle-regulated gen...
ORGANISM(S): Schizosaccharomyces pombe 
2015-09-18 | E-MTAB-2725 | biostudies-arrayexpress
TranscriptomicsIdentification of RNAs associated with the Caenorhabditis elegans spliced-leader trans-splicing proteins SNA-2, SNA-3, SNR-2 and SUT-1 proteins by RIP-Seq.
This study aimed to identify RNAs bound to the C. elegans SNA-2, SNA-3, SUT-1 and SNR-2 proteins involved in spliced leader 1 trans-splicing through use of RNA immunoprecipitation sequencing (RIP-Seq). Four IP sample replicates and four control sample replicates were sequenced for each protein.
ORGANISM(S): Caenorhabditis elegans 
2024-04-24 | E-MTAB-13193 | biostudies-arrayexpress
TranscriptomicsPoplar-Laccaria: A Timecourse of Mycorrhizal Root Tip Development
This study characterizes the transcriptomic alterations of P. trichocarpa during interaction with the ectomycorrhizal fungus Laccaria bicolor S238N. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation. We performed 32 hybridizations (NimbleGen) with s...
ORGANISM(S): Populus trichocarpa 
2014-10-09 | E-GEOD-62172 | biostudies-arrayexpress
TranscriptomicsLaccaria-Poplar: A Timecourse of Mycorrhizal Root Tip Development
This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with P. trichocarpa. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicol...
ORGANISM(S): Populus trichocarpa 
2014-10-10 | E-GEOD-62225 | biostudies-arrayexpress
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