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MetabolomicsMetabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach
Deciphering the metabolome is essential for a better understanding of the cellular metabolism as a system. Typical metabolomics data show a few but significant correlations among metabolite levels when data sampling is repeated across individuals grown under strictly controlled conditions. Although ...
2014-03-01 | MTBLS45 | MetaboLights
ProteomicsA Bothrops jararaca venom subproteome to benchmark a spectral clustering algorithm by controlling the selection bias
The clustering of mass spectra is a critical component of many proteomics applications. The clustering validation science is just as important, having evolved side by side with the clustering algorithms themselves. In this work, we build on Rieder et al. 's cluster validation framework, and we discu...
ORGANISM(S): Bothrops jararaca (Jararaca) (Bothrops jajaraca) 
2022-03-16 | PXD022124 | Pride
Bothrops jararaca Venomics Spectral clustering Algorithm 
ProteomicsYPIC challenge 2018: A case study in characterizing an unknown protein sample
For the YPIC challenge 2018 contestants were invited to try to decipher two unknown English questions encoded by a synthetic protein expressed in E. coli. We present how we analyzed this unknown sample using a tryptic digest with dynamic exclusion disabled to increase the signal-to-noise ratio of t...
ORGANISM(S): Escherichia coli 
2019-06-11 | PXD014003 | Pride
Spectral clustering Spectral networking Ypic De novo Synthetic protein 
UnknownSpectral clustering for TRUS images.
Not available
S-EPMC1845149 | biostudies-literature
UnknownExploratory Item Classification Via Spectral Graph Clustering.
Not available
S-EPMC5635860 | biostudies-literature
UnknownSpectral density-based clustering algorithms for complex networks.
Not available
S-EPMC10101435 | biostudies-literature
UnknownHypergraphs with edge-dependent vertex weights: p-Laplacians and spectral clustering
Not available
S-EPMC9989290 | biostudies-literature
UnknownRational partitioning of spectral feature space for effective clustering of massive spectral image data.
Not available
S-EPMC11439947 | biostudies-literature
UnknownSpectral clustering using Nystrom approximation for the accurate identification of cancer molecular subtypes.
Not available
S-EPMC5501792 | biostudies-literature
UnknownSpectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins.
Not available
S-EPMC6456873 | biostudies-literature
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