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TranscriptomicsTranscription profiling of yeast cdc15 block-release (Spellman et al.)
Reproduced from P. T. Spellman, G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein and B. Futcher, "Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization," Molecular Biology of the Cell 9 (12),...
ORGANISM(S): Saccharomyces cerevisiae 
2005-10-05 | E-SMDB-1886 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast elutriation time series (Spellman et al.)
Reproduced from P. T. Spellman, G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein and B. Futcher, "Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization," Molecular Biology of the Cell 9 (12),...
ORGANISM(S): Saccharomyces cerevisiae 
2005-10-05 | E-SMDB-1887 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast alpha-factor block-release (Spellman et al.)
Reproduced from P. T. Spellman, G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein and B. Futcher, "Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization," Molecular Biology of the Cell 9 (12),...
ORGANISM(S): Saccharomyces cerevisiae 
2005-10-05 | E-SMDB-1889 | biostudies-arrayexpress
ProteomicsMHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection
We sought to build a catalog of epitopes presented by breast cancers using a renewable resource of well-characterized breast cancer cell lines. Starting from 70 breast cancer cell lines, we measured MHC class I abundance and used pre-existing RNAseq data to identify either HLA-A*02 or MHC class I-po...
ORGANISM(S): Homo sapiens (Human) 
2018-01-16 | PXD006406 | Pride
Immune system Mass spectrometry Human Mhc class 1 ligands Hla typing Peptide sequencing Breast cancer Cell lines Immunoprecipitation Rna-seq 
TranscriptomicsTwo yeast forkhead genes regulate the cell cycle and pseudohyphal growth
There are about 800 genes in Saccharomyces cerevisiae whose transcription is cell-cycle regulated. Some of these form clusters of co-regulated genes. The 'CLB2' cluster contains 33 genes whose transcription peaks early in mitosis, including CLB1, CLB2, SWI5, ACE2, CDC5, CDC20 and other genes importa...
ORGANISM(S): Saccharomyces cerevisiae 
2005-08-24 | E-GEOD-3182 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human breast cancer samples
We measured baseline gene expression profiles for a set of breast tumors. Note: this experiment was modified in June 2008 when the CEL files associated with some hybridizations were changed.
ORGANISM(S): Homo sapiens 
2008-06-28 | E-TABM-158 | biostudies-arrayexpress
UnknownDonor whole blood DNA methylation is not a strong predictor of acute graft versus host disease in unrelated donor allogeneic haematopoietic cell transplantation.
Not available
S-EPMC11021570 | biostudies-literature
GenomicPatient-Specific Factors Influence Somatic Variations in VHL Tumors

Patients affected with von Hippel-Lindau disease are at risk of developing multiple independent clear cell renal carcinomas. This study performed whole genome sequencing on 40 tumors from 6 VHL patients to compare somatic variation patterns within and between patients. Although tumors from the sa...

phs001107 | dbGaP
TranscriptomicsRNA expression changes in MDA-MB-231 cells following MEK inhibition
Molecular responses to MEK inhibition in cancer cells are complex and dynamic. We performed a time-series experiment to measure global RNA expression changes following treatment with the MEK inihibor U0126 MDA-MB-231 human breast cancer cells were grown in low-serum conditions. Treatment with U0126 ...
ORGANISM(S): Homo sapiens 
2015-04-01 | E-GEOD-61364 | biostudies-arrayexpress
GenomicsEGAD00000000119
Genotypes from cell lines derived from breast carcinoma tissue
EGAD00000000119 | EGA
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