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TranscriptomicsA diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
Endogenous small RNAs, including microRNAs (miRNAs) and short-interfering RNAs (siRNAs), function as posttranscriptional or transcriptional regulators in plants. miRNA function is essential for normal development and therefore likely to be important in the growth of the rice grain. To investigate th...
ORGANISM(S): Oryza sativa 
2008-08-21 | E-GEOD-11014 | biostudies-arrayexpress
TranscriptomicsLow oxygen responsive small RNAs in Arabidopsis
Low-oxygen stress associated with natural phenomena such as waterlogging, results in widespread transcriptome changes and a metabolic switch from aerobic respiration to anaerobic fermentation. High-throughput sequencing of small RNA libraries obtained from low-oxygen stressed and control root tissue...
ORGANISM(S): Arabidopsis thaliana 
2009-09-30 | E-GEOD-16971 | biostudies-arrayexpress
TranscriptomicsCHX Treatment
Cycloheximide treatment of cotton ovules Keywords: Antibiotic Treatment Single timepoint, 6 slides, 3 Biological replicates, each biological replicate having 2 technical replicates. Dyes were swapped between technical replicates.
ORGANISM(S): Gossypium hirsutum 
2005-11-03 | E-GEOD-3543 | biostudies-arrayexpress
TranscriptomicsEucalyptWood
* In response to gravitational stresses, angiosperm trees form tension wood in the upper sides of branches and leaning stems in which cellulose content is higher, microfibrils are typically aligned closely with the fibre axis and the fibres often have a thick inner gelatinous cell wall layer (G-laye...
ORGANISM(S): Eucalyptus nitens 
2011-05-19 | E-GEOD-8816 | biostudies-arrayexpress
TranscriptomicsDP16 Time Course
DP16 ovules of -4, -2, 2 dpa compared to 0 dpa Keywords: Time Course 4 timepoints at -4 dpa, -2 dpa, 0 dpa and +2 dpa. -4, -2 and +2 dpa have 4 slides each, 2 Biological replicates, each biological replicate having 2 technical replicates. Dyes were swapped between technical replicates. 0 dpa has 3 ...
ORGANISM(S): Gossypium hirsutum 
2005-11-03 | E-GEOD-3545 | biostudies-arrayexpress
TranscriptomicsCotton ovule development
Cotton ovule development, mutant vs wild type, Comparisons of DP16 0 dpa ovule Keywords: WildType vs Mutant 7 comparisons and one 0 dpa control. The 1A/DP16 & 4A/DP16 comparisons have 8 slides each, 4 Biological replicates, each biological replicate having 2 technical replicates. Dyes were swapped b...
ORGANISM(S): Gossypium hirsutum 
2005-11-03 | E-GEOD-3546 | biostudies-arrayexpress
TranscriptomicsCane Toad Metamorphis
Comparison of pre and post metamorphis phases of cane toad Keywords: Developmental Stages Samples were harvested at 9, 18, 28 (pre-metamorph), 30 and 53 (post-metamorph) days of age and RNA extracted using Trizol Reagent (Invitrogen). Total RNA (100 mg) was reverse transcribed (Qiagen) and labelled ...
ORGANISM(S): Bufo marinus 
2008-11-27 | E-GEOD-6987 | biostudies-arrayexpress
TranscriptomicsSuppressing the barley uroporphyrinogen gene by Ds activation tagging element generates developmental photosensitivity
Chlorophyll production involves the synthesis of photoreactive intermediates that are toxic when in excess due to the production of reactive oxygen species (ROS). A novel activation tagged barley mutant is described that results from antisense suppression of a uroporphyrinogen III synthase (Uros) ge...
ORGANISM(S): Hordeum vulgare 
2009-04-23 | E-GEOD-11776 | biostudies-arrayexpress
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