Srb - OmicsDI

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Unknown (732)
Genomics (181)
Transcriptomics (76)
Proteomics (25)
Other (2)
Metabolomics (2)
Multiomics (1)

Organisms

Mus musculus (28)
Homo sapiens (27)
Saccharomyces cerevisiae (11)
Schizosaccharomyces pombe (8)
Arabidopsis thaliana (3)
Candida albicans (2)
Drosophila melanogaster (2)
Phaseolus coccineus (2)
Agathobacter rectalis ATCC 33656 (2)
Bacteroides caccae ATCC 43185 (2)
Bacteroides ovatus ATCC 8483 (2)
Bacteroides thetaiotaomicron VPI-5482 (2)
Collinsella aerofaciens ATCC 25986 (2)
Desulfovibrio piger GOR1 (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Marvinbryantia formatexigens DSM 14469 (2)
Oleidesulfovibrio alaskensis (2)
[Clostridium] symbiosum (2)
Nitratidesulfovibrio vulgaris str. Hildenborough (2)
cellular organisms (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Desulfofundulus sp. TPOSR (2)
Saccharomyces cerevisiae S288C (1)
Glycine max (1)
Intrasporangium calvum (1)
Desulfobacula toluolica Tol2 (1)
Desulfococcus multivorans DSM 2059 (1)
Desulfofundulus australicus DSM 11792 (1)
Desulfonema limicola str. Jadebusen (1)
Desulfonema magnum str. Montpellier (1)

Organisms

Homo sapiens (12)
bioreactor metagenome (5)
marine sediment metagenome (3)
sludge metagenome (3)
Acinetobacter bohemicus (2)
microbial mat metagenome (2)
biofilm metagenome (2)
sediment metagenome (2)
wastewater metagenome (2)
Mus musculus (2)
Leucobacter sp. TV5 (1)
Nitratidesulfovibrio sp. SRB-5 (1)
steel metagenome (1)
Desulfovibrio piger (1)
Desulfotomaculum nigrificans CO-1-SRB (1)
Nitratidesulfovibrio termitidis (1)
Candidatus Thiodictyon syntrophicum (1)
Oceanidesulfovibrio marinus (1)
Oceanidesulfovibrio indonesiensis (1)
Intrasporangium calvum (1)
Citrobacter sp. SRB (1)
Nitratidesulfovibrio vulgaris (1)
Desulfobacterales bacterium (1)
Oleidesulfovibrio alaskensis G20 (1)
Nitratidesulfovibrio vulgaris str. Hildenborough (1)
bioanode metagenome (1)
Desulfovibrio aminophilus (1)
salt marsh metagenome (1)
microbialite metagenome (1)
Brevundimonas diminuta (1)

Repository

ENA (166)
biostudies-arrayexpress (79)
pride (15)
geo (13)
MassIVE (7)
jPOST (2)
MetaboLights (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Blood plasma (1)
Cell suspension culture (1)

Disease

Not Available (1)

Technology Type

Mass Spectrometry (15)
Bottom-up proteomics (10)
Shotgun proteomics (3)
Mass spectrometry (2)
Data-dependent acquisition (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

TripleTOF 5600 (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Instrument (1)
LTQ (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
Orbitrap fusion lumos (1)
Q Exactive HF (1)
Q exactive HF (1)
TimsTOF Ultra (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Q Exactive (1)

Publication Date

2015 (21)
2014 (13)
2016 (11)
2025 (10)
2012 (9)
2013 (8)
2011 (7)
2010 (7)
2026 (6)
2020 (5)
2009 (3)
2004 (3)
2024 (3)
2023 (2)
2022 (2)
2008 (2)
2005 (1)
2007 (1)
2019 (1)
2017 (1)
2021 (1)

CHEBI ID

CHEBI:132188 (1)
CHEBI:132948 (1)
CHEBI:132966 (1)
CHEBI:132983 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133469 (1)
CHEBI:133515 (1)
CHEBI:133523 (1)
CHEBI:133672 (1)
CHEBI:133677 (1)
CHEBI:133693 (1)
CHEBI:133733 (1)
CHEBI:136461 (1)
CHEBI:138368 (1)
CHEBI:138529 (1)
CHEBI:143243 (1)
CHEBI:145970 (1)
CHEBI:15245 (1)
CHEBI:15318 (1)
CHEBI:15346 (1)
CHEBI:15350 (1)
CHEBI:15354 (1)
CHEBI:15356 (1)
CHEBI:15428 (1)
CHEBI:15676 (1)
CHEBI:15698 (1)
CHEBI:15721 (1)
CHEBI:15727 (1)

Metabolite Name

(3'-5')-cytidylyluridine (1)
(3'-5')-guanylyluridine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPI (20:4) (1)
1-linoleoyl-GPC (18:2) (1)
1-methyladenine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6) (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) (1)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6) (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (1)
1-palmitoyl-GPC (16:0) (1)
1-palmitoyl-GPE (16:0) (1)
1-palmitoyl-GPI (16:0) (1)
1-stearoyl-2-arachidonoyl-GPC (18:0/20:4) (1)
1-stearoyl-2-arachidonoyl-GPE (18:0/20:4) (1)

First Public Date

2025 (29)
2022 (19)
2019 (16)
2026 (13)
2020 (13)
2024 (11)
2023 (11)
2021 (10)
2013 (10)
2014 (9)
2015 (8)
2018 (6)
2017 (6)
2016 (5)

Classification

bacteria (2)

Study type

Transcription profiling by array (47)
ChIP-seq (15)
RNA-seq of coding RNA (8)
ChIP-chip by tiling array (3)
Other (2)
Unknown experiment type (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (76)
2023 (75)
2021 (75)
2025 (74)
2024 (65)
2020 (57)
2018 (48)
2019 (45)
2016 (42)
2015 (42)
2017 (36)
2014 (35)
2012 (25)
2013 (20)
2011 (20)
2010 (19)
2009 (9)
2026 (7)
2008 (6)
2005 (6)
2007 (6)
2004 (5)
2002 (5)
2000 (3)
2006 (2)
2001 (2)
1999 (2)
1998 (2)
2003 (1)
1997 (1)

Lab affiliation

General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (6)
Wageningen University (2)
Advanced Water Managment Center, The University of Queensland (1)
EDyP (1)
Institute of Organic Chemistry and Biochemistry, Czech Academy of Science, Flemingovo n. 2, Prague, 166 10, Czech Republic (1)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China (1)
Molecular Environmental Biotechnology, UFZ, Leipzig, Germany (1)
Plant and Microbial Biology Department, North Carolina State University, USA (1)
University of Groningen. GRIP. (1)

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Nitratidesulfovibrio sp. SRB-5

Nitratidesulfovibrio sp. SRB-5 Genome sequencing and assembly

PRJNA757687 | ENA

Citrobacter sp. SRB isolate:SRB

Citrobacter sp. SRB isolate:SRB Genome sequencing

PRJNA1478401 | ENA

Transcription profiling of soybean SRB embryo regions at the globular stage

We microdissected each embryo region from 6-micron paraffin sections using the Leica AS LMD system to identify all genes active in different embryo region of an SRB seed containing globular-stage embryos. Experiment Overall Design: Globular-stage embryo regions were isolated using the Leica AS LMD s...

ORGANISM(S): Phaseolus coccineus

2008-06-15 | E-GEOD-7592 | biostudies-arrayexpress

Desulfotomaculum nigrificans CO-1-SRB

Desulfotomaculum carboxydivorans CO-1-SRB genome sequencing

PRJNA50757 | ENA

Expression data from SRB embryo regions at the globular stage

ORGANISM(S): Glycine max Phaseolus coccineus

2007-04-27 | GSE7592 | GEO

Biofilm from Electrochemical Biosensor Enriched with Geobacter/SRB/Acetogen

Biofilm from Electrochemical Biosensor Enriched with Geobacter, SRB, and Acetogens

PRJNA1294856 | ENA

SRB sequencing

PRJNA787661 | ENA

mixed SRB

PRJNA785771 | ENA

The metabolic niche of a prominent sulfate-reducing human gut bacterium [3]

Sulfate-reducing bacteria (SRB) colonize the guts of ~50% of humans. We used genome-wide transposon mutagenesis and insertion-site sequencing (INSeq), RNA-Seq, plus mass spectrometry to characterize genetic and environmental factors that impact the niche of Desulfovibrio piger, the most common SRB i...

ORGANISM(S): Mus musculus

2013-07-12 | E-GEOD-48808 | biostudies-arrayexpress

SRB-2: a promiscuous rainbow aptamer for live-cell RNA imaging.

Not available

S-EPMC6182184 | biostudies-literature

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1018 Results

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