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ProteomicssRNA scr5239 involved in important feedback loop of S. coelicolor central metabolism
The project is focused on the highly conserved sRNA scr5329 in Streptomyces coelicolor. A proteomics approach revealed that the sRNA regulates several metabolic enzymes, among them the Phosphoenolpyruvate-Carboxykinase (PEPCK), a key enzyme of the central carbon metabolism. The sRNA scr5239 promotes...
ORGANISM(S): Streptomyces coelicolor Bacteria 
2020-01-28 | PXD016811 | Pride
Carbon metabolism Srna Streptomyces Dasr 
TranscriptomicsInvestigating the sRNA and mRNA transcriptional response to antibiotics in methicillin-resistant Staphylococcus aureus using Illumina RNAseq
Coordinated protein-coding sequence transcriptional responses of Staphylococcus aureus to antimicrobial exposure are well described but little is known of the role of bacterial non-coding, small RNAs (sRNAs) in these responses. Here we used RNAseq to investigate the sRNA response of the epidemic mul...
ORGANISM(S): Staphylococcus aureus 
2013-06-10 | E-GEOD-40864 | biostudies-arrayexpress
Genomicsblueberry sRNA
blueberry sRNA
PRJEB23596 | ENA
TranscriptomicsSequence, Biogenesis, and Function of Diverse sRNA Classes Bound to the Piwi-family Proteins of Tetrahymena thermophila
PAZ/PIWI-domain (PPD) proteins carrying small RNAs (sRNAs) function in gene and genome regulation. The ciliate Tetrahymena thermophila encodes numerous PPD proteins exclusively of the Piwi clade. We show that the three Tetrahymena Piwi-family proteins (Twis) preferentially expressed in growing cells...
ORGANISM(S): Tetrahymena thermophila 
2009-11-23 | E-GEOD-17006 | biostudies-arrayexpress
ProteomicsRNase III CLASH uncovers sRNA regulatory networks coupling metabolism to production of cytolytic toxins in methicillin resistant Staphylococcus aureus
Methicillin resistant Staphylococcus aureus (MRSA) is an infectious pathogen that poses a significant threat to human health. MRSA is renowned for its ability to adapt to and even thrive in hostile environment within its host. By expressing a battery of virulence factors and toxins, MRSA is able to ...
ORGANISM(S): Staphylococcus aureus 
2022-06-16 | PXD025122 | Pride
Toxin Srna Staphylococcus aureus 
TranscriptomicsSmall RNAs in transgenic TaNAM-RNAi wheat plants
To explore the effect of stable RNAi on the small RNA (sRNA) population in wheat, we constructed a sRNA library from hexaploid wheat that expresses an RNAi construct under the 35S promoter that targets the endogenous NO APICAL MERISTEM (TaNAM) gene. The presence of this RNAi transgene causes a 40% r...
ORGANISM(S): Triticum aestivum 
2010-05-28 | E-GEOD-22048 | biostudies-arrayexpress
TranscriptomicsGenome-wide characterization of maize small RNA loci and their regulation in the required to maintain repression6-1 (rmr6-1) mutant and long-term abiotic stresses
Endogenous small RNAs (sRNAs) contribute to gene regulation and genome homeostasis but their activities and functions are incompletely known. The maize genome has a high number of transposable elements (TEs; almost 85%), some of which spawn abundant sRNAs. We performed sRNA and total RNA sequencing ...
ORGANISM(S): Zea mays 
2016-01-20 | E-GEOD-70487 | biostudies-arrayexpress
GenomicsVqmR sRNA target identification
VqmR sRNA target identification
PRJNA475803 | ENA
GenomicsVadR sRNA target identification
VadR sRNA target identification
PRJNA608178 | ENA
GenomicsRoot cell layer specific AGO1-bound sRNA and total sRNA from Arabidopsis ktn1 mutant
Root cell layer specific AGO1-bound sRNA and total sRNA from Arabidopsis ktn1 mutant
PRJNA714072 | ENA
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