Srnas - OmicsDI

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Arabidopsis thaliana (66)
Homo sapiens (30)
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Escherichia coli (19)
Staphylococcus aureus (19)
Escherichia coli str. K-12 substr. MG1655 (17)
Zea mays (17)
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synthetic construct (4)
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bacteria (188)
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RNA-seq of non coding RNA (112)
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Lab affiliation

1Department of Biology, Swiss Federal Institute of Technology (ETH), Universitätstrasse 2, 8092 Zürich, Switzerland (1)
Centre for Genomic Regulation, CRG (1)
Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Bellaterra, Barcelona 08193, Spain (1)
Centre for Synthetic and Systems Biology (SynthSys) University of Edinburgh Max Born Crescent CH Waddington Building, room 3.06 EH9 3BF Edinburgh (1)
Clinical Proteomics Facility Medical Biochemistry Academic Medical Center, University of Amsterdam (1)
Department of Biochemistry and Molecular Biology, Brody School of Medicine at East Carolina University, NC, USA (1)
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Department of Biology, Johns Hopkins University, USA (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, D-17489 Greifswald, Germany. (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD USA (1)
Dpt. Microbiología del Suelo y Sistemas Simbióticos Estación Experimental del Zaidín, CSIC Profesor Albareda, 1 18008 Granada (Spain) Tlf. +34 958181600 Ext. 176 (1)
Dr. Christina Ludwig Center Leader Proteomics Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Helmholtz Centre for Environmental Research - UFZ GmbH Department of Molecular Toxicology Permoserstrasse 15, 04316 Leipzig, Germany (1)
Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Centre for Infection Research (HZI), D-97080 Würzburg, Germany RNA Biology Group, Institute for Molecular Infection Biology (IMIB), University of Würzburg, D-97080 Würzburg, Germany (1)
Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Centre for Infection Research (HZI), D-97080 Würzburg, Germany Institute of Molecular Infection Biology, University of Würzburg, D-97080 Würzburg, Germany (1)
Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Centre for Infection Research (HZI), Würzburg, Germany (1)
Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel Niemannsweg 11 24105 Kiel, Germany (1)
Interfaculty Institute of Genetics and Functional Genomics, Department of Functional Genomics, University Medicine Greifswald, Germany (1)
Laboratoire de Chimie Bacterienne (UMR7283)- Aix Marseille Universite Institut de Microbiologie de la Mediterranee CNRS, 31 chemin Joseph Aiguier 13009 Marseille, France (1)
Laboratoire de Spectrometrie de Masse Proteomique Institut Curie PSL Research University (1)
Laboratory of Non-coding RNA and Genome Rearrangements, Institute of Biochemistry and Biophysics, PAS (1)
Laboratory of Post-Transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Czech Republic (1)
Massachusetts General Hospital Center for Cancer Research and Department of Medicine Harvard Medical School Charlestown, MA, 02129, USA (1)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (Leibniz-HKI), Jena, Germany (1)
Molekulare Biotechnologie Fachbereich Biowissenschaften Buchmann Insitutee for Molecular Life Sciences Goethe Universität Frankfurt (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales (1)
Senior Lecturer Department of Biology and Biochemistry University of Bath Claverton Down Bath BA2 7AY (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
State Key Laboratory of Hybrid Rice, College of Life Science, Wuhan University, Wuhan, 430072 China Hubei Hongshan Laboratory, Wuhan, 430072 China (1)

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Affinity chromatography-based identification of sRNA protein partners in Rhizobia

This project aims to identify novel protein partners of conserved trans-sRNAs in the α-proteobacterium Sinorhizobium meliloti. Trans-sRNAs (AbcR2, NfeR1 and EcpR1) were tagged at their 5’ ends with the MS2 aptamer. To identify the proteins associated with the trans-sRNAs we: i) expressed and purifie...

ORGANISM(S): Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti)

2020-10-19 | PXD006410 | Pride

Prediction of Non-Coding sRNAs and Screening of Virulence-Related sRNAs of Salmonella Pullorum

PRJNA1120424 | ENA

Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing

Melon (Cucumis melo L.) is a commercially important fruit crop that is cultivated worldwide. The melon research community has recently benefited from the determination of a complete draft genome sequence and the development of associated genomic tools, which have allowed us to focus on small RNAs (s...

ORGANISM(S): Cucumis melo

2011-08-03 | E-GEOD-28653 | biostudies-arrayexpress

Transcriptional Analysis of Deinococcus radiodurans for Novel sRNAs expression that are Differentially Expressed under Ionizing Radiation

In this study, we identified potential sRNA candidates inÂ D. radiodurans by a whole transcriptome deep sequencing analysis, and confirm the expression of 31 sRNAs in D. radiodurans with Northern blotting analysis and RT-PCR. A total of 8 confirmed sRNAs showed differential expression during recover...

ORGANISM(S): Deinococcus radiodurans R1

2015-01-22 | E-GEOD-64952 | biostudies-arrayexpress

Neisseria meningitides small RNA's regulate Citric acid cycle activity under Feast and Famine conditions

We identified twin small non-coding RNAs regulating tricarboxylic acid (TCA) cycle activity in Neisseria meningitidis. Expression of TCA cycle enzymes was elevated in sRNA deletion mutants. Direct interaction between sRNAs and the ribosomal entry sites on target mRNAs was demonstrated. Expression of...

ORGANISM(S): Neisseria meningitidis serogroup B

2017-03-22 | PXD000891 | Pride

Data independant mass spectrometry Pathogens Neisseria meningitides Feast and famine Small rna's

Characterization of small interfering RNAs derived from the geminivirus/betasatellite complex using deep sequencing

Small RNA (sRNA)-guided RNA silencing is a critical antiviral defense mechanism employed by a variety of eukaryotic organisms. Although the induction of RNA silencing by bipartite and monopartite begomoviruses has been described in plants, the nature of begomovirus/betasatellite complexes remains un...

ORGANISM(S): Tomato yellow leaf curl China virus

2011-08-21 | E-GEOD-26368 | biostudies-arrayexpress

Mobile 24 nt small RNAs direct transcriptional gene silencing in the root meristems of Arabidopsis thaliana

We grafted Transcriptional Gene Silencing (TGS)-inducing wild type Arabidopsis and a mutant that is compromised in 24 nucleotide (nt) small RNA (sRNA) production onto a wild type reporter line. We observed that 21-24 nt sRNAs were transmitted across a graft union yet only the 24 nt sRNAs directed RN...

ORGANISM(S): Arabidopsis thaliana

2011-10-23 | E-GEOD-31651 | biostudies-arrayexpress

Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing

Small non-coding RNAs (sRNAs) play key roles in plant development, growth and responses to biotic and abiotic stresses. At least four classes of sRNAs have been well characterized in plants, including repeat-associated siRNAs (rasiRNAs), microRNAs (miRNAs), trans-acting siRNAs (tasiRNAs) and natural...

ORGANISM(S): Cunninghamia lanceolata

2012-06-27 | E-GEOD-24226 | biostudies-arrayexpress

Prediction of Non-Coding sRNAs and Screening of Virulence-Related sRNAs of Salmonella Pullorum

Purpose: Searching for sRNAs in Salmonella pullorum by RNA sequencing and exploring their functions.Methods: High-throughput sequencing of RNA extracted from Salmonella pullorum under normal growth conditions to detect newly discovered sRNAs, followed by experiments to verify their functions.Results...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Pullorum

2024-06-10 | GSE269156 | GEO

Identification of novel sRNAs in mycobacterial species.

Not available

S-EPMC3828370 | biostudies-literature

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