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Unknown
(425)
Genomics
(221)
Transcriptomics
(61)
Proteomics
(25)
Metabolomics
(13)
Models
(4)
Other
(1)
Organisms
Saccharomyces cerevisiae
(9)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
(6)
Mycobacterium tuberculosis
(4)
Staphylococcus xylosus
(3)
Aggregatibacter actinomycetemcomitans
(2)
Chlamydomonas reinhardtii
(2)
Campylobacter jejuni
(2)
Methanosarcina acetivorans
(1)
Dunaliella viridis
(1)
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
(1)
Gordonia sp. KTR9
(1)
Thermoplasma acidophilum DSM 1728
(1)
Karenia brevis
(1)
Psychrobacter arcticus 273-4
(1)
Burkholderia ambifaria
(1)
Candida albicans SC5314
(1)
Vibrio vulnificus
(1)
Streptococcus thermophilus
(1)
Leptocylindrus aporus
(1)
Fusobacterium nucleatum
(1)
Propionibacterium freudenreichii subsp. shermanii
(1)
Burkholderia contaminans
(1)
Legionella pneumophila
(1)
Burkholderia cepacia
(1)
Schizosaccharomyces pombe
(1)
Saccharomyces cerevisiae S288C
(1)
Acinetobacter baumannii
(1)
Mycobacterium tuberculosis H37Rv
(1)
Pseudomonas aeruginosa
(1)
Escherichia coli
(1)
Organisms
food fermentation metagenome
(8)
food metagenome
(4)
Halobacterium salinarum NRC-1
(3)
fermentation metagenome
(3)
Lactobacillus helveticus
(3)
Lactococcus lactis subsp. lactis
(3)
Staphylococcus carnosus
(2)
Caulobacter vibrioides
(2)
Streptococcus thermophilus
(2)
Kocuria rhizophila
(2)
Lacticaseibacillus paracasei
(2)
Chlamydomonas reinhardtii
(2)
Latilactobacillus sakei
(2)
Lacticaseibacillus casei
(2)
Lactobacillus delbrueckii subsp. bulgaricus
(2)
Lactococcus lactis
(2)
Pediococcus acidilactici
(2)
Lactiplantibacillus plantarum
(2)
Sporolactobacillus pectinivorans
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp223
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp120
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp46
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp17
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp122
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp48
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp125
(1)
Lacticaseibacillus paracasei subsp. paracasei CNCM I-4648
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp227
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp49
(1)
Lacticaseibacillus paracasei subsp. paracasei Lpp41
(1)
Repository
ENA
(220)
biostudies-arrayexpress
(55)
pride
(22)
MetaboLights
(11)
geo
(8)
BioModels
(2)
FAIRDOMHub
(2)
GNPS
(2)
iProX
(2)
jPOST
(1)
Tissue
Brain
(1)
Cell culture
(1)
Cell line cell
(1)
Diploid cell
(1)
Photosynthetic cell
(1)
Disease
Disease free
(1)
Technology Type
Mass Spectrometry
(22)
Shotgun proteomics
(12)
Mass spectrometry
(8)
Bottom-up proteomics
(6)
NMR spectroscopy
(3)
Data-dependent acquisition
(3)
SWATH MS
(2)
Mass spectrometry assay
(1)
Affinity purification coupled with mass spectrometry proteomics
(1)
Data-independent acquisition
(1)
Instrument Platform
Liquid Chromatography MS - negative - reverse phase
(3)
TSQ Vantage (Thermo Scientific)
(2)
Liquid Chromatography MS - positive - reverse phase
(2)
AB SOLiD System
(1)
G2505A DNA microarray scanner [Agilent]
(1)
G2565BA DNA microarray scanner [Agilent]
(1)
Illumina MiSeq
(1)
Illumina HiSeq 2500
(1)
Illumina HiSeq 2000
(1)
Illumina HiSeq 3000
(1)
NextSeq 500
(1)
MicrOTOF-Q II
(1)
MicrOTOF-QII (Bruker Daltonics)
(1)
Q Exactive
(1)
LTQ Classic (Thermo Scientific)
(1)
7T LTQ FT Ultra, Thermo Fisher Scientific
(1)
Thermo Scientific LTQ FT Ultra
(1)
Nuclear Magnetic Resonance (NMR)
(1)
Direct infusion MS - negative
(1)
LTQ Orbitrap Classic (Thermo Scientific)
(1)
5975C Series GC/MSD (Agilent)
(1)
Bruker
(1)
Nuclear Magnetic Resonance (NMR) -
(1)
Gas Chromatography MS - positive
(1)
Liquid Chromatography MS - alternating - hilic
(1)
Publication Date
2012
(12)
2014
(10)
2019
(8)
2011
(8)
2023
(8)
2022
(7)
2016
(7)
2010
(7)
2015
(6)
2025
(6)
2020
(4)
2013
(4)
2017
(3)
2008
(3)
2026
(3)
2018
(3)
2009
(2)
2021
(2)
2005
(1)
2024
(1)
CHEBI ID
CHEBI:15741
(7)
CHEBI:27897
(6)
CHEBI:26271
(5)
CHEBI:28300
(5)
CHEBI:28044
(5)
CHEBI:6650
(5)
CHEBI:18012
(5)
CHEBI:15354
(5)
CHEBI:16811
(4)
CHEBI:24898
(4)
CHEBI:29016
(4)
CHEBI:15366
(4)
CHEBI:16865
(4)
CHEBI:16040
(4)
CHEBI:16695
(4)
CHEBI:78320
(4)
CHEBI:15428
(4)
CHEBI:16335
(4)
CHEBI:17596
(4)
CHEBI:17822
(3)
CHEBI:16709
(3)
CHEBI:22660
(3)
CHEBI:26986
(3)
CHEBI:16708
(3)
CHEBI:18385
(3)
CHEBI:25017
(3)
CHEBI:33198
(3)
CHEBI:30753
(3)
CHEBI:30763
(3)
CHEBI:27266
(3)
Metabolite Name
Succinate
(5)
Tryptophan
(4)
Choline
(4)
Lactate
(4)
Fumarate
(4)
Serine
(3)
Proline
(3)
Malate
(3)
Inosine
(3)
Cytosine
(3)
Adenine
(3)
Phenylalanine
(3)
Threonine
(3)
Methionine
(3)
Butyrate
(3)
Isoleucine
(3)
Leucine
(3)
Glycine
(3)
Tyramine
(2)
L-ornithine
(2)
L-leucine
(2)
L-isoleucine
(2)
Uridine
(2)
Hypoxanthine
(2)
Betaine
(2)
Arginine
(2)
Tyrosine
(2)
Pyroglutamate
(2)
Glutamine
(2)
Acetate
(2)
IsPrivate
False
(2)
First Public Date
2013
(64)
2024
(23)
2026
(22)
2025
(21)
2023
(13)
2021
(13)
2018
(12)
2014
(11)
2017
(10)
2020
(9)
2022
(8)
2016
(5)
2015
(4)
2019
(3)
2012
(2)
Classification
bacteria
(9)
viruses
(2)
Modification
2x(15)N labeled L-lysine
(1)
Study type
Transcription profiling by array
(39)
RNA-seq of coding RNA
(10)
ChIP-chip by array
(2)
MNase-seq
(1)
Other
(1)
ChIP-seq
(1)
RNA-seq of total RNA
(1)
Release Date
2022
(58)
2023
(53)
2020
(52)
2021
(45)
2018
(36)
2019
(34)
2024
(34)
2025
(33)
2016
(17)
2012
(16)
2017
(15)
2014
(15)
2015
(14)
2013
(11)
2010
(9)
2011
(8)
2026
(7)
2008
(5)
2009
(4)
2005
(4)
2007
(4)
2006
(2)
2000
(2)
2004
(1)
2001
(1)
Lab affiliation
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY
(1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University Munich, Freising, Germany
(1)
Clinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria
(1)
Department of Biochemistry & Molecular Biology Michigan State University
(1)
Department of Biological Sciences, Ohio University
(1)
Department of Biology, Johns Hopkins University, Baltimore, MD 21218 USA
(1)
Department of Chemistry, T.C. Jenkins Department of Biophysics, Department of Biology, Johns Hopkins University
(1)
Department of Genome Sciences, University of Washington, Seattle, USA
(1)
Department of Modeling of Biological Processes COS, Heidelberg University, Germany
(1)
Harvard Medical School, Boston, MA, USA
(1)
Institute for Systems Biology, Seattle, WA, USA
(1)
Institute of Biotechnology in Medicine, National Yang Ming University, Taipei, Taiwan, ROC
(1)
Institute of Structural and Molecular Biology, Division of Biosciences, Darwin Building, University College London, Gower Street, London WC1E 6BT, United Kingdom
(1)
Mass Spectrometry Research Infrastructure, Aarhus University
(1)
Nutrition Program, School of Nutrition and Public Health, Oregon State University, Corvallis, OR, 97331
(1)
Professor, Dept. Cell Biology Director, Taplin Biological MS Facility
(1)
School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332
(1)
School of Life Sciences, University of Nottingham
(1)
Univ. Bordeaux, Plateforme Proteome, 33000, Bordeaux, France
(1)
Univ. Bordeaux, Plateforme Proteome, 33000, Bordeaux, France ( lab head )
(1)
University of Greifswald, Department of Microbial Proteomics, Institute of Microbiology, D-17489 Greifswald, Germany
(1)
Wageningen University
(1)
Tags
pathogen
(11)
pathogen:bacterium
(9)
xref:PubMed:17785531
(3)
xref:PubMed:29222100
(2)
xref:PubMed:41391147
(2)
pathogen:virus
(2)
xref:PubMed:30374338
(1)
xref:PubMed:28163827
(1)
xref:PubMed:29702317
(1)
xref:PubMed:23632166
(1)
xref:PubMed:36906309
(1)
xref:PubMed:36461307
(1)
xref:PubMed:39847340
(1)
xref:PubMed:26767617
(1)
xref:PubMed:39713304
(1)
xref:PubMed:25566208
(1)
xref:PubMed:41185315
(1)
xref:PubMed:15774659
(1)
xref:PubMed:17150273
(1)
xref:PubMed:27516092
(1)
xref:PubMed:22325718
(1)
xref:PubMed:20628579
(1)
xref:PubMed:25366036
(1)
xref:PubMed:17322329
(1)
xref:PubMed:31997433
(1)
xref:PubMed:41528136
(1)
xref:PubMed:21148414
(1)
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Resistomes of cheese, probiotics and starter cultures
Shotgun metagenomics reveals differences in resistomes among probiotics, starter cultures, and cheeses
PRJEB75030
|
ENA
Cite
Application of Lacticaseibacillus paracasei and Tetragenococcus halophilus as adjunct starter cultures in Gouda cheese production
adjunct starter cultures in Gouda cheese production
PRJEB81476
|
ENA
Cite
Lactococcus lactis Diversity in Undefined Mixed Dairy Starter Cultures as Revealed by Comparative Genome Analyses and Targeted Amplicon Sequencing of epsD
Lactococcus lactis diversity in undefined mixed dairy starter cultures
PRJEB23335
|
ENA
Cite
Impact of Lactococcus lactis as starter cultures on microbiota of an Italian raw milk cheese "Fromadzo"
Impact of Lactococcus lactis as starter cultures on microbiota of an Italian raw milk cheese "Fromadzo"
PRJNA619437
|
ENA
Cite
A multifaceted investigation of lactococcal strain diversity in undefined mesophilic starter cultures.
Not available
S-EPMC10952461
|
biostudies-literature
Cite
The Ecuadorian Nacional cocoa variety may outshine the use of starter cultures
The Ecuadorian Nacional cocoa variety may outshine the use of starter cultures
PRJEB82327
|
ENA
Cite
Fermentation of kefir with traditional freeze-dried starter cultures successfully recreates fresh culture fermented kefir.
Not available
S-EPMC12549565
|
biostudies-literature
Cite
Genomic and phenotypic imprints of microbial domestication on cheese starter cultures.
Not available
S-EPMC11452379
|
biostudies-literature
Cite
Chromosomal diversity in Lactococcus lactis and the origin of dairy starter cultures.
Not available
S-EPMC2962554
|
biostudies-literature
Cite
Characterization of a Leuconostoc bacteriophage infecting flavor producers of cheese starter cultures.
Not available
S-EPMC3426687
|
biostudies-literature
Cite
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