Statistical post-processing

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Transcriptomics (407)
Unknown (239)
Proteomics (150)
Genomics (45)
Metabolomics (31)
Other (5)

Organisms

Homo sapiens (120)
Mus musculus (92)
Rattus norvegicus (20)
Arabidopsis thaliana (18)
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Bos taurus (9)
Ovis aries (9)
Drosophila melanogaster (7)
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Mustela putorius furo (2)
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Organisms

Homo sapiens (12)
Mus musculus (10)
Rattus norvegicus (3)
Salmo trutta fario (1)
Cavia porcellus (1)
Ruditapes decussatus (1)
Macaca fascicularis (1)
Oncorhynchus mykiss (1)
Caenorhabditis elegans (1)
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Danio rerio (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (410)
pride (132)
ENA (38)
MetaboLights (31)
MassIVE (14)
geo (12)
EGA (1)
iProX (1)
jPOST (1)
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Tissue

Cell culture (23)
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Embryonic stem cell (3)
Blood plasma (3)
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Whole body (2)
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Disease

Breast cancer (5)
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ER positive breast cancer (1)
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Represent tolerant CD4+ T cells that have not been activated (1)
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Psoroptes ovis infestation (1)
N/a (1)
None (1)
Control (1)
Hyposmia (1)
Anosmia (1)
Myositis (1)
Interstitial lung disease (1)
Calcium oxalate nephrolithiasis (1)
Systolic heart failure (1)

Technology Type

Mass Spectrometry (132)
Shotgun proteomics (60)
Bottom-up proteomics (43)
Data-dependent acquisition (25)
Mass spectrometry (24)
Data-independent acquisition (13)
Affinity purification coupled with mass spectrometry proteomics (11)
SWATH MS (8)
NMR spectroscopy (5)
SRM/MRM (5)
Gel-based experiment (5)
Mass spectrometry assay (4)
All-ion fragmentation (3)
Top-down proteomics (3)
MSE (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry imaging (1)
Affinity proteomics (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
Q Exactive (5)
ArrayWoRx Biochip Reader [Applied Precision] (4)
ScanArray 5000 [PerkinElmer] (3)
Axon- GenePix4000B (2)
418 [Affymetrix] (2)
GenePix 4000B [Axon Instruments] (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
LTQ Orbitrap Elite (2)
Orbitrap Fusion (2)
Sequel IIe (1)
PromethION (1)
10X Genomics Chromium (1)
BD FACS JAZZ (1)
BD FACS Aria III (1)
Agilent G2505B scanner (1)
Generation III Array Scanner [Amersham] (1)
ScanArray Express HT [PerkinElmer] (1)
HiSeq X Ten (1)
Illumina NovaSeq 6000 (1)
Orbitrap Ascend (1)
ZenoTOF 7600 (1)
LTQ Orbitrap Velos (1)
Q Exactive HF (1)
Q Exactive Plus (1)
LTQ Orbitrap (1)
Q Exactive HF-X (1)
Orbitrap Exploris 240 (1)

Publication Date

2010 (100)
2011 (64)
2012 (59)
2013 (39)
2025 (35)
2008 (31)
2014 (30)
2015 (29)
2026 (27)
2009 (27)
2019 (24)
2021 (22)
2023 (19)
2018 (17)
2024 (16)
2022 (13)
2020 (10)
2007 (10)
2017 (9)
2016 (8)
2005 (6)
2006 (3)
2004 (3)
2003 (1)

CHEBI ID

CHEBI:28044 (9)
CHEBI:17306 (8)
CHEBI:30769 (8)
CHEBI:25094 (7)
CHEBI:18186 (7)
CHEBI:15676 (7)
CHEBI:16335 (7)
CHEBI:17750 (7)
CHEBI:15891 (7)
CHEBI:27897 (7)
CHEBI:17596 (7)
CHEBI:15756 (7)
CHEBI:17368 (7)
CHEBI:36219 (6)
CHEBI:16450 (6)
CHEBI:17256 (6)
CHEBI:15611 (6)
CHEBI:18237 (6)
CHEBI:17126 (6)
CHEBI:28300 (6)
CHEBI:16708 (6)
CHEBI:17724 (6)
CHEBI:16870 (6)
CHEBI:24898 (6)
CHEBI:28875 (6)
CHEBI:15428 (6)
CHEBI:30746 (6)
CHEBI:28790 (6)
CHEBI:27266 (6)
CHEBI:7916 (6)

Metabolite Name

Choline (5)
Citric acid (5)
L-Tyrosine (5)
L-Phenylalanine (5)
Sphinganine (4)
Glycine (4)
Coumarin (4)
L-Histidine (4)
Taurine (4)
L-Glutamine (4)
Adenine (4)
Uridine (4)
Sucrose (4)
Creatine (4)
L-Isoleucine (4)
(Z)-3-butylidene-7-hydroxyphthalide (3)
Funtumine (3)
Hexose (3)
Lycocernuine (3)
Melamine (3)
Ondansetron (3)
Stigmatellin Y (3)
Taurochenodeoxycholic acid (3)
Alpha-Lactose (3)
Capsi-amide (3)
Pyruvic acid (3)
D-Galactose (3)
Umbelliferone (3)
D-Glucose (3)
3-Methylhistidine (3)

First Public Date

2014 (15)
2019 (7)
2017 (4)
2026 (3)
2025 (3)
2024 (3)
2021 (1)
2015 (1)
2013 (1)

Study type

Transcription profiling by array (341)
RNA-seq of coding RNA (16)
Unknown experiment type (12)
ChIP-seq (6)
RNA-seq of non coding RNA (6)
Comparative genomic hybridization by array (4)
MicroRNA profiling by array (3)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by tiling array (2)
Transcription profiling by tiling array (2)
RNAi profiling by array (2)
Transcription profiling by RT-PCR (2)
Methylation profiling by array (2)
Baseline (1)
Plant - Two-color microarray (1)
Human - High-throughput sequencing (1)
Genotyping by array (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2010 (103)
2011 (65)
2012 (61)
2013 (45)
2025 (38)
2015 (33)
2014 (33)
2008 (33)
2022 (30)
2009 (27)
2024 (27)
2021 (26)
2020 (25)
2023 (23)
2018 (16)
2017 (15)
2019 (13)
2016 (9)
2007 (9)
2026 (7)
2005 (6)
2006 (3)
2004 (1)
2003 (1)

Lab affiliation

Research Institute of Molecular Pathology (IMP), Vienna BioCenter, Vienna, Austria (2)
NIAID, NATIONAL INSTITUTES OF HEALTH (2)
Research Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria (2)
University of Copenhagen, Novo Nordisk Center for Protein Research, Proteomics Department, Proteomics and Cell Signaling Lab (2)
Laboratory of Vaccines for the Developing World, Institute for Glycomics, Southport, QLD, Australia (1)
Applied Science and Technology Department–BioSolar Lab, Politecnico di Torino,Italy (1)
University of Groningen Faculty of Sciences and Engineering Groningen Research Institute of Pharmacy Analytical Biochemistry (1)
National Key Laboratory of Medical Molecular Biology and Department of Immunology; Institute of Basic Medical Sciences; Chinese Academy of Medical Sciences (1)
Luxembourg Institute of Science and Technology department: Environmental Research and Innnovation (1)
Department of Neurology and Weill Institute for Neurosciences, University of California, San Francisco (1)
Instituto Multidisciplinario de Investigación y Transferencia Agroalimentaria y Biotecnológica (IMITAB CONICET-UNVM). Campus Universitario. Av. Arturo Jauretche 1555. Villa María (C.P. 5900), Córdoba, Argentina. Instituto Académico Pedagógico de Ciencias Básicas y Aplicadas, Universidad Nacional Villa María (UNVM). Campus Universitario. Av. Arturo Jauretche 1555. Villa María (C.P. 5900), Córdoba, Argentina. (1)
National Institute of Mental Health and Neurosciences (1)
Medical Univeristy of South Carolina Division of Infectious Diseases Department of Microbiology and Immunology (1)
Univ.-Prof. Dr., University of Vienna, Max Perutz Labs, Vienna Biocenter Campus (VBC) (1)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland and Faculty of Science, University of Zurich, Zurich, Switzerland (1)
Department of Medical Microbiology, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia. (1)
PRISM laboratory, Inserm U1192, University of Lille (1)
Impact Proteomics (1)
Biochemistry and Molecular Genetics (1)
Institure of Molecular Pathology (1)
Laboratory of Toxinology, Oswaldo Cruz Institute, Fiocruz, Av. Brasil 4365, Manguinhos 21040-360, Rio de Janeiro, Brazil (1)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), Copenhagen, Denmark (1)
Oregon Health & Science University 2720 S Moody Ave Portland, Oregon 97201, USA (1)
Austrian Centre of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria; Medical University of Graz, Institute of Pathology, Research Unit Functional Proteomics and Metabolic Pathways, Stiftingtalstrasse 24, 8010 Graz, Austria; Omics Center Graz, BioTechMed-Graz, Stiftingtalstrasse 24, 8010 Graz, Austria. (1)
Cellzome A GSK Company, Heidelberg 69117, Germany (1)
Cellular and Molecular Pathology, UCSF (1)
1. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2. Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH93BF, United Kingdom ( lab head ) (1)
Department of Microbiology, Immunobiology and Genetics, Max Perutz Labs, University of Vienna, Vienna BioCenter (VBC), Vienna, Austria (1)
Institute of Medical Biochemistry, Protein Core Facility, Medical University of Innsbruck, 6020 Innsbruck, Austria (1)
Proteomics and Modomics Experimental Core Facility (PROMEC) Department of Clinical and Molecular Medicine Medisinsk teknisk forskningssenter Olav Kyrres gt. 9 N-7489 Trondheim Norway (1)

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Improving predictions of convective storm wind gusts through statistical post-processing of neural weather models.

Not available

S-EPMC12594611 | biostudies-literature

Impact of post-processing methods on apparent diffusion coefficient values.

Not available

S-EPMC5591618 | biostudies-literature

Post-processing and weighted combination of infectious disease nowcasts.

Not available

S-EPMC11902281 | biostudies-literature

PINE: An Automation Tool to Extract & Visualize Functionally Enriched Networks from Mass Spectrometry-Based Proteomics Datasets

Recent surges in mass spectrometry-based proteomics studies demands a concurrent rise in speedy and optimized data processing tools and pipelines. While several stand-alone databases exist that store gene interaction and annotation information, we developed Protein Interaction Network Extractor (PIN...

ORGANISM(S): Mus Musculus

2021-02-23 | PXD017324 | panorama

A novel mean shape based post-processing method for enhancing deep learning lower-limb muscle segmentation accuracy.

Not available

S-EPMC11452003 | biostudies-literature

Multimodality Image Post-processing in Detection of Extratemporal MRI-Negative Cortical Dysplasia.

Not available

S-EPMC6010529 | biostudies-literature

Towards implementing artificial intelligence post-processing in weather and climate: proposed actions from the Oxford 2019 workshop.

Not available

S-EPMC7898128 | biostudies-literature

Genome-wide mRNA processing in methanogenic archaea reveals post-transcriptional regulation of ribosomal protein synthesis.

Not available

S-EPMC5499594 | biostudies-literature

From mobile crowdsourcing to crowd-trusted food price in Nigeria: statistical pre-processing and post-sampling.

Not available

S-EPMC10338426 | biostudies-literature

Differences of uniquely identified peptides between ddaPASEF and diaPASEF

Recent advancements in mass spectrometry-based proteomics have made it possible to conduct comprehensive protein analysis. In particular, the emergence of the data-independent acquisition (DIA) method powered by machine learning has significantly improved protein identification effi-ciency. However,...

ORGANISM(S): Homo Sapiens (human)

2024-12-01 | PXD056754 | JPOST Repository

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