Stone J J - OmicsDI

Show results for

Unknown (3747)
Proteomics (51)
Transcriptomics (33)
Genomics (14)
Metabolomics (7)
Models (2)
Other (1)

Organisms

Homo sapiens (40)
Mus musculus (15)
Arabidopsis thaliana (4)
Bos taurus (2)
Rattus norvegicus (2)
Pseudotsuga menziesii (1)
Pan troglodytes (1)
Danio rerio (1)
Pyrus sinkiangensis (1)
1144889 (1)
Acinetobacter baumannii (1)
Aenocyon dirus (1)
Aepyceros melampus (1)
Agrobacterium tumefaciens (1)
Amblyomma cajennense (1)
Antidorcas marsupialis (1)
Blastococcus saxobsidens (1)
Canis lupus familiaris (1)
Dendrobium huoshanense (1)
Epichloe festucae E2368 (1)
Escherichia coli (1)
Geodermatophilus obscurus DSM 43160 (1)
Klebsiella ornithinolytica (1)
Klebsiella pneumoniae subsp. pneumoniae (1)
Lathyrus oleraceus (1)
Lolium perenne subsp. perenne (1)
Nicotiana benthamiana (1)
Ovis aries (1)
Plasmodium falciparum Palo Alto/Uganda (1)
Plum pox virus (1)

Organisms

Xanthomonas prunicola (2)
Oxalobacter formigenes OXCC13 (1)
Oxalobacter formigenes (1)
Picea sitchensis (1)
Xanthomonas (1)
Enterobacter hormaechei (1)
Mus musculus (1)

Repository

pride (44)
biostudies-arrayexpress (33)
ENA (9)
MetaboLights (7)
EGA (5)
MassIVE (4)
BioModels (2)
iProX (2)
GPMDB (1)
jPOST (1)

Tissue

Cell culture (4)
Kidney (3)
Leaf (2)
Plant cell (2)
Saliva (2)
Salivary gland (2)
T cell (2)
Tooth (2)
Urine (2)
Whole body (2)
Amnion (1)
Antler (1)
Ascites (1)
Bacterial protein (1)
Blood plasma (1)
Bone (1)
Bone marrow (1)
Brain (1)
Cell line cell (1)
Early embryonic cell (1)
Embryonic stem cell (1)
Epithelial cell (1)
Erythrocyte (1)
Fetal membrane (1)
HeLa cell (1)
Lung (1)
Melanocyte of skin (1)
Placenta (1)
Platelet (1)
Pseudostem (1)

Disease

Glioma (1)
Acute myeloid leukemia (1)
Not Available (1)
Amyotrophic lateral sclerosis (1)
Disease free (1)
Nephrolithiasis (1)
Plasmodium falciparum malaria (1)
Polycystic kidney disease (1)
Skin cancer (1)

Technology Type

Mass Spectrometry (44)
Shotgun proteomics (24)
Bottom-up proteomics (14)
Mass spectrometry (5)
Gel-based experiment (3)
SWATH MS (3)
NMR spectroscopy (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
SRM/MRM (2)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Data-independent acquisition (1)
HDMSE (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina MiSeq (2)
MaXis (2)
Nuclear Magnetic Resonance (NMR) - (2)
Illumina HiSeq 2000 (1)
Instrument (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
LTQ Velos (1)
Q Exactive (1)
UHPLC-DAD-HR-MS/MS (1)

Publication Date

2021 (10)
2024 (9)
2010 (9)
2026 (9)
2018 (7)
2020 (7)
2015 (6)
2023 (5)
2016 (4)
2025 (4)
2017 (3)
2014 (3)
2013 (3)
2009 (2)
2008 (2)
2007 (2)
2004 (2)
2022 (2)
2012 (1)
2011 (1)
2005 (1)

UNIPROT ID/AC

P16068 (1)
P19687 (1)

CHEBI ID

CHEBI:15891 (3)
CHEBI:16359 (3)
CHEBI:16704 (3)
CHEBI:16919 (3)
CHEBI:17368 (3)
CHEBI:17687 (3)
CHEBI:18257 (3)
CHEBI:48430 (3)
CHEBI:111517 (2)
CHEBI:1148 (2)
CHEBI:133199 (2)
CHEBI:133657 (2)
CHEBI:137921 (2)
CHEBI:141 (2)
CHEBI:15035 (2)
CHEBI:15318 (2)
CHEBI:15354 (2)
CHEBI:15355 (2)
CHEBI:15365 (2)
CHEBI:15372 (2)
CHEBI:15554 (2)
CHEBI:15622 (2)
CHEBI:15694 (2)
CHEBI:15698 (2)
CHEBI:15721 (2)
CHEBI:15824 (2)
CHEBI:15843 (2)
CHEBI:15929 (2)
CHEBI:16480 (1)
CHEBI:50211 (1)

Metabolite Name

(S)-4-Hydroxymandelonitrile (2)
3-Sulfopyruvic acid (2)
5-Amino-6-(5'-phosphoribitylamino)uracil (2)
5-Hydroxy-L-tryptophan (2)
Acetylcysteine (2)
Chenodeoxycholic acid (2)
Cytidine monophosphate (2)
D-Sedoheptulose 7-phosphate (2)
Deoxycytidine (2)
Gamma-Glutamylthreonine (2)
Guanosine monophosphate (2)
Hexanoylcarnitine (2)
Hypoxanthine (2)
Imidazoleacetic acid riboside (2)
Inosine (2)
Inosine 2',3'-cyclic phosphate (2)
Isocitric acid (2)
Monoisobutyl phthalic acid (2)
N-Acetyl-L-phenylalanine (2)
N-Ribosylhistidine (2)
Oleic acid (2)
SM(d18:0/16:1(9Z)) (2)
Shikimic acid (2)
Thymine (2)
Trans-4-Hydroxycyclohexylacetic acid (2)
Undecylenic acid (2)
Uracil (2)
Uric acid (2)
()-2-Hydroxy-4-(methylthio)butanoic acid (1)
(+)-2-Sterpurene-6,12,15-triol (1)

First Public Date

2017 (5)
2023 (2)
2025 (1)
2014 (1)

Modelling Approach

Differential equation model (1)
Ordinary differential equation model (1)

Lab affiliation

CEA-Marcoule, DSV-iBEB-SBTN-LBSP, 30207 Bagnols-sur-Cèze, France (3)
Keck MS & Proteomics Resource Yale School of Medicine (3)
Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Rd. E., Guelph, Ontario, Canada, N1G 2W1 (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
1Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Anhui University of Traditional Chinese Medicine (1)
BioArCh, Department of Archaeology, University of York (1)
Biomedical Research Center, Slovak Academy of Sciences (1)
Department of Biomedical and Clinical Sciences, Faculty of Medicine and Health Sciences, Linköping University, Sweden (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Chemistry, King's College London (1)
Department of Obstetrics and Gynaecology, Faculty of Medical and Health Sciences, The University of Auckland, New Zealand (1)
Department of Obstetrics, University and University Hospital of Zurich, Zurich, Switzerland (1)
Department of Pharmaceutical Sciences, University at Buffalo, US (1)
Division of Oncogenomics, Oncode institute, The Netherlands Cancer Institute, Plesmanlaan 121, 1066CX, Amsterdam, the Netherlands (1)
ERTP (Environmental Research and Technology Platform), Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 41, Rue du Brill, L-4422 Belvaux, Luxembourg (1)
Gamaleya Research Center for Epidemiology and Microbiology, Moscow, 123098, Russia (1)
Genome Sciences, University of Washington (1)
Infection and Immunity Program, Monash Biomedicine Discovery Institute & Department of Biochemistry and Molecular Biology, Monash University, VIC 3800, Australia (1)
KU Leuven - University of Leuven, Department of Neurosciences, Experimental Neurology and Leuven Research Institute for Neuroscience and Disease (LIND), 3000 Leuven, Belgium VIB, Vesalius Research Center, Laboratory of Neurobiology, 3000 Leuven, Belgium (1)
Laboratory of Mass Spectrometry Intercollegiate Faculty of Biotechnology UG-MUG (1)
Laboratory of Mass Spectrometry Intercollegiate Faculty of Biotechnology UG-MUG Abrahama 58 80-307 Gdansk, Poland (1)
Medical Proteomics Unit, Office for Research and Development, Faculty of Medicine Siriraj Hospital, and Center forResearch in Complex Systems Science, Mahidol University, Bangkok, Thailand (1)
Medical Proteomics Unit, Research Department, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand (1)
Medical Proteomics Unit, Research departmetn, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand (1)
Molecular and Cellular Biology Department, University of Guelph, 50 Stone Rd. E. Guelph, Ontario, Canada, N1G 2W1 (1)
Molecular and Cellular Biology Department, University of Guelph, 50 Stone Rd. E., Guelph, ON, N1H 2W1 (1)
Museum national d'Histoire naturelle UMR 7245 MCAM 43 rue Cuvier CP 54 F-75005 Paris FRANCE (1)
National Instiute of Standards and Technology, Charleston, SC, USA (1)
NextGen Health, CSIR, South Africa (1)

IsPrivate

False (2)

Classification

bacteria (1)

Study type

Transcription profiling by array (23)
RNA-seq of coding RNA (7)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
MicroRNA profiling by array (1)

Release Date

2022 (447)
2025 (428)
2021 (425)
2023 (403)
2024 (380)
2020 (273)
2019 (248)
2018 (188)
2017 (173)
2016 (152)
2015 (126)
2014 (84)
2013 (82)
2012 (70)
2011 (60)
2026 (59)
2010 (58)
2009 (42)
2008 (29)
2007 (18)
2006 (12)
2005 (8)
2004 (4)
2002 (4)
1998 (3)
2003 (1)
2001 (1)
2000 (1)
1996 (1)

Previous page
1 / 386
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 386
Next page

Sort by:

Relevance

Page size

A randomized prospective study: assessment of transient ureteral stenting by mono-J insertion after primary URS and stone extraction (FaST 3).

Not available

S-EPMC8560672 | biostudies-literature

Characterizations of HSP90-interacting complex in renal cells using tandem affinity purification and its potential role in kidney stone formation

Heat shock protein 90 (HSP90) is a highly abundant molecular chaperone that interacts with many other intracellular proteins to regulate various cellular processes. However, compositions of the HSP90-interacting complex remain underinvestigated. This study thus aimed to characterize such complex in ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2018-12-17 | MSV000083252 | MassIVE

Kidney Stone Induces Developmental Stage-specific Alterations in Gene Expression

OBJECTIVES: Kidney stone diseases are common in premature infants, but the underlying molecular and cellular mechanisms are not fully defined. We carried out a prospective observational study using microarray analysis to identify factors that may be crucial for the initiation and progression of ston...

ORGANISM(S): Mus musculus

2010-01-13 | E-GEOD-18160 | biostudies-arrayexpress

Polarization profiling of renal macrophages in stone model mice

We recently reported elimination of renal crystals and migration of macrophages (MM-OM-^F) around crystals in hyperoxaluric mice, suggesting MM-OM-^Fs might eliminate crystals. MM-OM-^Fs are of 2 phenotypes: inflammatory (M1) and anti-inflammatory (M2). Because M2MM-OM-^Fs are considered to be invol...

ORGANISM(S): Mus musculus

2013-10-22 | E-GEOD-51466 | biostudies-arrayexpress

Urinary proteins from stone formers promote calcium oxalate crystallization, growth and aggregation via oxidative modifications

Various urinary parameters have been used to determine kidney stone risk. However, almost all of the widely used lithogenic indices rely on urinary concentrations of small molecules/ions and pH. We hypothesized that urinary macromolecules (especially proteins) also play a critical role in determinin...

ORGANISM(S): Homo sapiens (Human)

2026-03-09 | PXD050609 | Pride