Stone K K - OmicsDI

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UNIPROT ID/AC

A5YWB0 (1)
O13525 (1)
P00044 (1)
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P00127 (1)
P00128 (1)
P00163 (1)
P00175 (1)
P00330 (1)
P00331 (1)
P00358 (1)
P00359 (1)
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CHEBI ID

CHEBI:10723 (1)
CHEBI:1109 (1)
CHEBI:11851 (1)
CHEBI:12071 (1)
CHEBI:12936 (1)
CHEBI:12952 (1)
CHEBI:13086 (1)
CHEBI:13705 (1)
CHEBI:15343 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15361 (1)
CHEBI:15377 (1)
CHEBI:15379 (1)
CHEBI:15380 (1)
CHEBI:15414 (1)
CHEBI:15422 (1)
CHEBI:15428 (1)
CHEBI:15430 (1)
CHEBI:15435 (1)
CHEBI:15437 (1)
CHEBI:15439 (1)
CHEBI:15440 (1)
CHEBI:15441 (1)
CHEBI:15467 (1)
CHEBI:15468 (1)
CHEBI:15471 (1)
CHEBI:15491 (1)

Metabolite Name

Thymine (3)
(S)-N-(4,5-Dihydro-1-methyl-4-oxo-1H-imidazol-2-yl)alanine (2)
1-(9Z-Eicosenoyl)-sn-glycero-3-phosphocholine (2)
1-Pyrrolidineethanol (2)
2-Hydroxy-2-methylbutyric acid (2)
2-Piperidinone (2)
3-(1-Hydroxymethyl-1-propenyl)pentanedioic acid (2)
4-Hydroxybenzaldehyde (2)
4-Hydroxyhippuric acid (2)
7-Methylguanine (2)
Aspartylhydroxyproline (2)
Benzofuran (2)
Biliverdin (2)
Choline (2)
Creatine (2)
Creatinine (2)
Curdione (2)
D-1-[(3-Carboxypropyl)amino]-1-deoxyfructose (2)
Decanoylcarnitine (2)
Deoxycytidine (2)
Dodecanamide (2)
Dodecanoylcarnitine (2)
Glycylhydroxyproline (2)
Hexanoylcarnitine (2)
Histamine (2)
Hypoxanthine (2)
Indole (2)
Isovalerylglycine (2)
Kynurenic acid (2)
L-Arginine (2)

IsPrivate

False (1)

First Public Date

2025 (1)
2024 (1)
2023 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (6)
Unknown experiment type (1)
Animal - One-color microarray (1)
ChIP-chip by tiling array (1)
Transcription profiling by RT-PCR (1)
ChIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (283)
2022 (269)
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2025 (262)
2024 (251)
2020 (174)
2019 (164)
2018 (139)
2017 (114)
2016 (103)
2015 (93)
2014 (64)
2013 (58)
2011 (49)
2012 (48)
2010 (40)
2026 (38)
2009 (26)
2008 (16)
2007 (9)
2006 (7)
2005 (3)
2004 (3)
1996 (2)
2003 (1)
2002 (1)
2001 (1)

Lab affiliation

CEA-Marcoule, DSV-iBEB-SBTN-LBSP, 30207 Bagnols-sur-Cèze, France (3)
Keck MS & Proteomics Resource Yale School of Medicine (3)
Roswell Park Cancer Center Buffalo, NY, USA (2)
BioArCh, Department of Archaeology, University of York (1)
Department of Immunology and Cell Biology, Sherbrooke, QC, Canada (1)
Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Rd. E., Guelph, Ontario, Canada, N1G 2W1 (1)
Department of Obstetrics, University and University Hospital of Zurich, Zurich, Switzerland (1)
Division of Oncogenomics, Oncode institute, The Netherlands Cancer Institute, Plesmanlaan 121, 1066CX, Amsterdam, the Netherlands (1)
Gamaleya Research Center for Epidemiology and Microbiology, Moscow, 123098, Russia (1)
Laboratory of Mass Spectrometry Intercollegiate Faculty of Biotechnology UG-MUG Abrahama 58 80-307 Gdansk, Poland (1)
Medical Proteomics Unit, Office for Research and Development, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand (1)
Molecular and Cellular Biology Department, University of Guelph, 50 Stone Rd. E. Guelph, Ontario, Canada, N1G 2W1 (1)
Plant Genomic Network Research Team, RIKEN CSRS, JAPAN (1)
Rudolf Virchow Center for Experimental Biomedicine, Universität Würzburg, Josef-Schneider-Str. 2, 97080 Würzburg (1)
School of Biomedical and Healthcare Sciences Plymouth University Peninsula Schools of Medicine and Dentistry Plymouth University (UK) (1)
The Globe Institute, University of Copenhagen (1)
University of Alabama Birmingham Dept of Neurology (1)
University of Guelph 50 Stone Rd E Guelph, ON, Canada (1)
University of Guelph, Department of Molecular and Cellular Biology, 50 Stone Rd. E., Guelph, ON, N1G 2W1 (1)

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Gut Microbiome and Metabolome Signatures in Calcium Oxalate Stone Recurrence: A Multi-Omics Study

Background: The incidence and recurrence rate of nephrolithiasis have been increasing annually. Recent evidence highlights a close association between the composition and function of the gut microbiome and the occurrence and recurrence of kidney stones. We performed a multi-omic study to investig...

2026-03-03 | MTBLS13960 | MetaboLights

New records of powdery mildew fungi on stone fruits from India.

Not available

S-EPMC12602709 | biostudies-literature

Stone Metagenome

Stone Metagenome Raw sequence reads

PRJNA988025 | ENA

Proteomic analysis of urine and stone matrix of patients with kidney calculi

Proteins have been extracted from kidney calculi with SDS buffer. Proteins were seperated by 1D-SDS-PAGE and stained with coomassie. Each gel lane was cut into 5 (or 6) pieces. Proteins were digested in gel with trypsin. Tryptic peptides were analysed by nanoLC-MS/MS on an ion trap instrument (6340 ...

ORGANISM(S): Homo sapiens (Human)

2016-07-11 | PXD000302 | Pride

Pediatric Emergency Medicine Simulation Curriculum: Vitamin K Deficiency in the Newborn.

Not available

S-EPMC7830750 | biostudies-literature

Synchrotron radiation Ca K-edge 2D-XANES spectroscopy for studying the stratigraphic distribution of calcium-based consolidants applied in limestones.

Not available

S-EPMC7459109 | biostudies-literature

One-step laparoscopic cholecystectomy with common bile duct exploration and stone extraction versus two-step endoscopic retrograde cholangiography with stone extraction plus laparoscopic cholecystectomy for patients with common bile duct stones: a randomised feasibility and pilot clinical trial-the preGallStep trial.

Not available

S-EPMC9899655 | biostudies-literature

Proteomic analysis reveals some common proteins in the kidney stone matrix.

Not available

S-EPMC8323604 | biostudies-literature

The role of metal nanoparticles in the pathogenesis of stone formation

The present work is devoted to the study of morphology and composition of stones obtained as a result of surgical interventions for sialolithiasis The obtained results of clinical and laboratory studies allow us to broaden the view on the pathogenesis of stone formation and suggest that the occurren...

ORGANISM(S): Homo sapiens (Human)

2025-05-07 | PXD054153 | Pride

Endogenous infections Immunoglobulin Crystallization centers Salivary gland stones Metal nanoparticles Pathogenesis

Temporal Changes in Kidney Stone Composition and in Risk Factors Predisposing to Stone Formation.

Not available

S-EPMC5433898 | biostudies-literature

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