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TranscriptomicsEvaluating intra- and inter-individual variation in the human placental transcriptome
Background: Gene expression variation is a phenotypic trait of particular interest as it represents the initial link between genotype and other phenotypes. Analyzing how such variation apportions among and within groups allows for the evaluation of how genetic and environmental factors influence suc...
ORGANISM(S): Homo sapiens 
2015-03-07 | E-GEOD-66622 | biostudies-arrayexpress
GenomicsCustom 192-plex
VeraCode GoldenGate GT Assay technology
EGAD00010000853 | EGA
GenomicsSNP genotyping data in genes related to trace element homeostasis
In this study we provide data regarding sample charactheristics and genotypes in 150 human samples of European origin for SNPs located around genes related to metal homeostasis. SNPs were genotyped with the Illumina VeraCode technology (192-plex format). The genotyped SNPs were used to identify quan...
EGAS00001001292 | EGA
GenomicsUPF - Evolutionary Population Genetics lab Data Access Committee
Data Access Committee EGAC00001000244
EGAC00001000244 | EGA
Genomicsena-DATASET-UNIBE-07-04-2016-07:41:15:505-596 - samples
Mapped data (bam files) for high-throughput whole genome sequence data for 83 modern Aboriginal Australians
EGAD00001002001 | EGA
Genomics37a30206-29b3-47a0-90c4-eee326fe5b8b - samples
Genotype calls for 83 Aboriginal Australian genomes split by chromosomes. In short, genotypes were called individually with samtools. They were subsequently filtered with thresholds related to sequencing depth, location of variants, sequencing error, and strand bias. Once combined, the genotypes wer...
EGAD00001004155 | EGA
GenomicsRFMix
This dataset contains the per-chromosome RFMix input and output files for the local ancestry inference of 59 Aboriginal Australian genomes as reported in Malaspinas et al., 2016. Local ancestry was inferred assuming four mixing ancestral populations represented by: Europeans (27 individuals), Asians...
EGAD00010001575 | EGA
GenomicsMT alignment
Alignement including 83 MT AA sequences and 2 reference sequences, rCRS and RSRS
EGAD00010001574 | EGA
GenomicsY chromosome alignment
Variations on the Y chromosome from 44 samples
EGAD00010001573 | EGA
GenomicsA Genomic History of Aboriginal Australia
The population history of Aboriginal Australians remains largely uncharacterised. We generated high-coverage genomes for 83 Aboriginal Australians (speakers of Pama-Nyungan languages) and 25 Papuans from the New Guinea Highlands. We find that Papuan and Aboriginal Australian ancestors diversified 25...
EGAS00001001766 | EGA
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