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TranscriptomicsGenetic and Molecular Characterization of Submergence Response Identifies Subtol6 as a Major Submergence Tolerance Locus in Maize
Maize is highly sensitive to short term flooding and submergence. We aimed to discover genetic variation for submergence tolerance in maize and elucidate the genetic basis of submergence tolerance through transcriptional profiling of contrasting genotypes. A diverse set of maize nested association m...
ORGANISM(S): Zea mays 
2015-01-01 | E-GEOD-63429 | biostudies-arrayexpress
ProteomicsQuantitative Phosphoproteomics Reveals Targets of Protein Kinase SnRK1 in Arabidopsis under Submergence
SNF1 RELATED PROTEIN KINASE 1 (SnRK1) is proposed as a central integrator of regulatory pathways in plant stress and energy starvation signaling. We observed in this study that the Arabidopsis SnRK1.1 dominant negative mutant (SnRK1.1K48M) had lower tolerance to submergence than the wild-type, sugge...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-04-07 | PXD001815 | Pride
Energy starvation Submergence Snrk1 Phosphoproteomics 
TranscriptomicsMolecular characterization of the submergence response of Arabidopsis thaliana ecotype Columbia
This study profiles transcriptomic changes of Arabidopsis thaliana Col-0 in response to submergence. This dataset includes CEL files, RMA signal values and MAS5 P/M/A calls from total mRNA populations of plants at 9 to 10 leaf rosette stage. Biological replicates of root and shoot tissues were harve...
ORGANISM(S): Arabidopsis thaliana 
2010-11-12 | E-GEOD-24077 | biostudies-arrayexpress
ProteomicsQuantitative proteomics Reveals Targets of Protein Kinase SnRK1 in Arabidopsis under Submergence
SNF1 RELATED PROTEIN KINASE 1 (SnRK1) is proposed as a central integrator of regulatory pathways in plant stress and energy starvation signaling. We observed in this study that the Arabidopsis SnRK1.1 dominant negative mutant (SnRK1.1K48M) had lower tolerance to submergence than the wild-type, sugge...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-04-07 | PXD002353 | Pride
Snrk1.1 Proteomics Submergence 
TranscriptomicsThe Submergence Tolerance Regulator Sub1A Mediates Stress-responsive Expression of AP2/ERF Transcription Factors
Rice NSF45K microarray experiment to dissect submergence tolerance response in submergence tolerant rice plant, M202(Sub1): We previously characterized the rice (Oryza sativa L.) Sub1 locus encoding three Ethylene Responsive Factor (ERF) transcriptional regulators. Genotypes carrying the Sub1A-1 a...
ORGANISM(S): Oryza sativa 
2010-03-08 | E-GEOD-17704 | biostudies-arrayexpress
TranscriptomicsTranscriptomic study (RNAseq) of Brachypodium distachyon ecotypes Bd21 and Bd2-3 under submergence stress
Purpose: The goal of this study is to compare the transcriptomes expressed during submergence stress of two Brachypodium distachyon ecotypes with contrasting survival under this stress. Bd21 is a submergence sensitive ecotype with EC50 of 2.5 days and Bd2-3 is a tolerant ecotype with EC50 of 4 days....
ORGANISM(S): Brachypodium distachyon 
2016-01-04 | E-GEOD-74222 | biostudies-arrayexpress
ProteomicsLeaf-age specific flood resilience in Arabidopsis thaliana is determined by distinct processes contributing to post-submergence recovery
While the molecular mechanisms mediating submergence tolerance have been extensively studied, those underpinning age-dependent resilience remain poorly characterized. In Arabidopsis thaliana, submergence elicits a leaf-age dependent phenotype in which senescence and death progress across an age grad...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2026-08-14 | PXD067068 | Pride
Arabidopsis thaliana leaf proteome post submergence recovery tmtpro 
TranscriptomicsMicroarray data from aerial tissue of Williams 82 soybean exposed to submergence and reoxygenation
Submergence is a major constraint for soybean production worldwide and transient inundation after seeding causes serious loss of soybean productivity. To characterize genome-scale adjustment of gene expression to submergence and reoxygenation, whole transcriptome analysis was conducted using Affyme...
ORGANISM(S): Glycine max 
2014-02-18 | E-GEOD-51710 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of indica rice cultivar FR13A under submergence treatment.
An indica rice cultivar FR13A, is widely grown as submergence tolerant variety and can withstand submergence up to two weeks. The tolerance is governed by a major QTL on chromosome 9 and represented as sub1. Recently the gene for sub1 has been mapped and cloned. However, the trait is governed by sev...
ORGANISM(S): Oryza sativa (indica cultivar-group) 
2008-06-14 | E-GEOD-6362 | biostudies-arrayexpress
TranscriptomicsPorteresia transcriptome sequencing
In this study, we aim to present the complete transcriptome of Asian wild rice, Porteresia. We generated about 375 million high-quality reads for five different conditions (ranging from 65 to 90 million reads for each condition) using Illumina high-throughput sequencing GAII platform. We mapped the ...
ORGANISM(S): Oryza coarctata 
2013-11-05 | E-GEOD-44913 | biostudies-arrayexpress
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