Subramanian K K

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Unknown (738)
Proteomics (23)
Transcriptomics (18)
Metabolomics (11)
Genomics (4)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (27)
Mus musculus (7)
Canis lupus familiaris (1)
Arabidopsis thaliana (1)
Bubalus bubalis (1)

Repository

biostudies-arrayexpress (18)
pride (16)
MetaboLights (11)
MassIVE (7)
EGA (4)
GPMDB (1)

Tissue

Cell culture (4)
Fibroblast (2)
Primary cell (2)
Cerebrospinal fluid (1)
Endothelial cell (1)
Liver (1)
Motor neuron (1)
Neuronal stem cell (1)
Papillary thyroid cancer cell line (1)
Permanent cell line cell (1)
Urine (1)
Vaginal fluid (1)
White adipose tissue (1)
White fat cell (1)

Disease

Normal (1)
Not Available (1)
Amyotrophic lateral sclerosis (1)
Breast cancer (1)
Retinoblastoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (12)
Mass spectrometry (9)
Bottom-up proteomics (3)
Mass spectrometry assay (2)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
Q Exactive (3)
Liquid Chromatography MS - negative - reverse phase (3)
LTQ Orbitrap Velos (2)
Affymetrix Fluidics Station 400 (1)
NextSeq 500 (1)
Instrument (1)
Exactive Plus (1)
LTQ Orbitrap Elite (1)
MALDI Synapt G2-S HDMS (1)
Liquid Chromatography MS - positive (1)

Publication Date

2022 (7)
2023 (6)
2016 (4)
2020 (4)
2006 (3)
2017 (3)
2026 (3)
2024 (3)
2014 (2)
2013 (2)
2011 (2)
2010 (2)
2005 (2)
2015 (2)
2021 (1)
2012 (1)
2008 (1)
2007 (1)
2018 (1)
2025 (1)
2019 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:16811 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:28716 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73024 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:1148 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:145227 (1)
CHEBI:15611 (1)
CHEBI:15676 (1)
CHEBI:15727 (1)
CHEBI:15765 (1)
CHEBI:15887 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
1-methyladenosine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)

Study type

Transcription profiling by array (12)
Unknown experiment type (3)
RNA-seq of coding RNA (3)

Release Date

2022 (98)
2021 (85)
2023 (83)
2025 (73)
2024 (73)
2020 (57)
2019 (55)
2017 (34)
2016 (30)
2018 (30)
2014 (28)
2015 (21)
2010 (15)
2011 (14)
2012 (13)
2026 (13)
2013 (9)
2006 (6)
2008 (4)
2005 (4)
2009 (4)
2007 (2)
2004 (2)
2003 (1)
2002 (1)
1999 (1)

Lab affiliation

CRUK & MRC Oxford Institute for Radiation Oncology, University of Oxford, Department of Oncology, Old Road Campus Research Building, Oxford, OX37DQ, UK (1)
Deparment of Animal Science, Bharathidasan University, Tiruchirappalli, Tamilnadu, India (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Cell and Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA-92037 (1)
Department of Medicine V, Hematology, Oncology and Rheumatology, University of Heidelberg, Heidelberg, Germany (1)
Department of Neuromedicine and Movement Science, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology (NTNU), Norway (1)
Dept of pathology, Vision research foundation, Chennai, India (1)
Dr. Sailaja Elchuri Associate Professor Department of Nanotechnology Vision Research Foundation Sankara Nethralaya Chennai 600006 (1)
Helmholtz-Centre for Environmental Research - UFZ Leipzig, Germany (1)
Institute for Diabetes and Cancer, Helmholtz Munich, Neuherberg, Germany; Joint Heidelberg-IDC Translational Diabetes Program, Inner Medicine 1, Heidelberg University Hospital, Heidelberg, Germany; German Center for Diabetes Research (DZD), and German Center for Cardiovascular Disease (DZHK), Neuherberg, Germany; Chair Molecular Metabolic Control, Technical University Munich, Germany (1)
Laboratory of Angiogenesis and Vascular Metabolism, Department of Oncology, KU Leuven, Leuven 3000, Belgium (1)
Otto Krayer Professor Department of Systems Biology Head of the Harvard Program in Therapeutic Sciences - HiTS Harvard Medical School (1)
Professor of Systems Pharmacology Head of Harvard Program in Therapeutic Science Harvard Medical School (1)
The Scripps Research Institute (1)
UCSF (1)
università degli studi di Milano, medicina veterinaria, DIMEVET (1)

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MEF-mKras-WT1

K-ras is one of the most frequently mutated human oncogenes. Activation of K-ras can lead to either senescence or proliferation in primary cells. The precise mechanism governing these distinct outcomes remains unclear. Here we utilized a loss-of-function screen to assess the role of specific genes ...

ORGANISM(S): Mus musculus

2010-03-06 | E-GEOD-15325 | biostudies-arrayexpress

The NORAD lncRNA assembles a topoisomerase complex critical for DNA replication and genome stability

Munschauer M, Nguyen CT, Sirokman K, Hartigan CR, Hogstrom L, Engreitz JM, Ulirsch JC, Fulco CP, Subramanian V, Chen J, Schenone M, Guttman M, Carr SA, Lander ES. Nature 2108.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2018-06-30 | MSV000082561 | MassIVE

Host Tree and Geography Induce Metabolic Shifts in the Epiphytic Liverwort Radula complanata

Bryophytes are prolific producers of unique, specialized metabolites that are not found in other plants. As many of these unique natural products are potentially interesting, for example, pharmacological use, variations in the production regarding ecological or environmental conditions have not ofte...

2026-01-29 | MTBLS6740 | MetaboLights

Dependence of crystallographic atomic displacement parameters on temperature (25-150 K) for complexes of horse liver alcohol dehydrogenase.

Not available

S-EPMC9527765 | biostudies-literature

An oncogenic Kras expression signature identified by cross-species

Mouse lung cancers were generated using the KrasLA model, in which a latent mutated Kras2 allele (resulting in the amino acid substitution G12D) is sporadically activated through spontaneous homologous recombination. These mice develop lung adenomas with full penetrance; over time, the tumors acquir...

ORGANISM(S): Mus musculus

2013-08-01 | E-GEOD-49200 | biostudies-arrayexpress

Site-specific proteolytic cleavage of the amino terminus of herpes simplex virus glycoprotein K on virion particles inhibits virus entry.

Not available

S-EPMC3233161 | biostudies-literature

Impact of in vitro hormone treatments on the bibenzyl production of Radula complanata (Untargeted metabolomics)

Bibenzyls are a specialized metabolite class found throughout the plant kingdom. One of the most prolific producers of bibenzyls are liverworts, specifically plants of the Radula genera. These plants possess an incredible diversity of bibenzyls, prenylated bibenzyls and a few (bis)bibenz...

2024-01-10 | MTBLS3563 | MetaboLights

Identification, characterization, and comparative genomic distribution of the HERV-K (HML-2) group of human endogenous retroviruses.

Not available

S-EPMC3228705 | biostudies-literature

Treatment to reduce vascular calcification in hemodialysis patients using vitamin K (Trevasc-HDK): A study protocol for a randomized controlled trial.

Not available

S-EPMC7478798 | biostudies-literature

Promoter expression of HERV-K (HML-2) provirus-derived sequences is related to LTR sequence variation and polymorphic transcription factor binding sites.

Not available

S-EPMC6102855 | biostudies-literature