Subramanian V V

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Unknown (580)
Transcriptomics (24)
Proteomics (23)
Metabolomics (11)
Genomics (5)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (21)
Mus musculus (13)
Saccharomyces cerevisiae (3)
Bombyx mori (1)
Canis lupus familiaris (1)
Arabidopsis thaliana (1)
Bacteria (1)
Bubalus bubalis (1)
Clarias gariepinus (1)
Glycine max (1)
Pichia kudriavzevii (1)
Shewanella oneidensis MR-1 (1)
Staphylococcus aureus (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (28)
pride (19)
MetaboLights (11)
MassIVE (4)
BioModels (1)
ENA (1)

Tissue

Cell culture (5)
Cell suspension culture (3)
Cell line cell (2)
Blood plasma (1)
Blood serum (1)
Brain (1)
Cerebrospinal fluid (1)
Endothelial cell (1)
Fibroblast (1)
Leaf (1)
Melanocyte (1)
Pancreas (1)
Permanent cell line cell (1)
Plant cell (1)
Saliva (1)
Skin (1)
Skin mucus (1)
Spleen (1)

Disease

Disease free (2)
Normal (1)
Breast cancer (1)
Lyme disease (1)
Retinoblastoma (1)

Technology Type

Mass Spectrometry (19)
Mass spectrometry (9)
Shotgun proteomics (9)
Bottom-up proteomics (7)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
Affinity proteomics (1)
All-ion fragmentation (1)
Data-independent acquisition (1)
Olink affinity proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
Liquid Chromatography MS - negative - reverse phase (3)
Q Exactive (2)
Affymetrix Fluidics Station 400 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
MALDI Synapt G2-S HDMS (1)
Liquid Chromatography MS - positive (1)

Publication Date

2022 (8)
2016 (7)
2013 (7)
2010 (7)
2024 (7)
2023 (6)
2021 (4)
2025 (3)
2012 (3)
2026 (3)
2014 (1)
2011 (1)
2007 (1)
2004 (1)
2018 (1)
2015 (1)
2020 (1)
2019 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:16811 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:28716 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73024 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:1148 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:145227 (1)
CHEBI:15611 (1)
CHEBI:15676 (1)
CHEBI:15727 (1)
CHEBI:15765 (1)
CHEBI:15887 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
1-methyladenosine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)

IsPrivate

False (1)

First Public Date

2021 (1)

Modelling Approach

Boolean model (1)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (5)
ChIP-seq (3)
Unknown experiment type (2)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (74)
2021 (60)
2024 (55)
2023 (53)
2025 (45)
2020 (41)
2019 (39)
2016 (35)
2018 (32)
2015 (30)
2017 (27)
2014 (24)
2013 (22)
2012 (19)
2010 (16)
2011 (8)
2026 (8)
2007 (6)
2009 (5)
2005 (3)
2008 (2)
2006 (2)
2004 (1)
2002 (1)

Lab affiliation

Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar, Technical University of Munich (1)
Centre for Pheromone Technology, Department of Animal Science, Bharathidasan University, Tiruchirappalli, India (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Cell Biology, Microbiology and Molecular Biology University of South Florida Tampa, Florida (1)
Department of Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany (1)
Department of Medicine V, Hematology, Oncology and Rheumatology, University of Heidelberg, Heidelberg, Germany (1)
Department of Plant Science, McGill University, Montreal (1)
Distinguished Professor Associate Chair for Undergraduate Affairs Department of Biochemistry University of Colorado Boulder (1)
Dr. Sailaja Elchuri Associate Professor Department of Nanotechnology Vision Research Foundation Sankara Nethralaya Chennai 600006 (1)
Helmholtz Zentrum München - German Research Center for Environmental Health, Institute of Radiation Biology, Neuherberg, Germany (1)
Institute for Systems Biology, Seattle, Washington, United States (1)
Laboratory of Angiogenesis and Vascular Metabolism, Department of Oncology, KU Leuven, Leuven 3000, Belgium (1)
Molecular Biology and Lewis-Sigler Institute for Intergrative Genomics, Princeton University, USA (1)
Otto Krayer Professor Department of Systems Biology Head of the Harvard Program in Therapeutic Sciences - HiTS Harvard Medical School (1)
Pharm-Biotechnology and Traditional Medecine centre, Mbarara University of Science and Technology, Mbarara, Uganda (1)
Principal Investigator,Rukmini Lab, ACTREC, Tata Memorial Centre (1)
Proteome Exploration Laboratory, Beckman Institute, California Institute of Technology (1)

Tags

xref:PubMed:30964323 (1)

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Uptake of eye care services in South India: Retrospective mapping of self-reported barriers using the Theoretical Domains Framework.

Not available

S-EPMC11823384 | biostudies-literature

PGPR regulate caspase-like activity, programmed cell death, and antioxidant enzyme activity in paddy under salinity.

Not available

S-EPMC3988331 | biostudies-literature

The NORAD lncRNA assembles a topoisomerase complex critical for DNA replication and genome stability

Munschauer M, Nguyen CT, Sirokman K, Hartigan CR, Hogstrom L, Engreitz JM, Ulirsch JC, Fulco CP, Subramanian V, Chen J, Schenone M, Guttman M, Carr SA, Lander ES. Nature 2108.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2018-06-30 | MSV000082561 | MassIVE

Longitudinal plasma Olink Target 96 proteomics in Lyme disease

Plasma affinity proteomics from a longitudinal Lyme disease study was acquired in two phases using five Olink Target 96 panels. In the first phase, Inflammation and Immune Response panels were used to profiled patient and control samples across study visits (T1, diagnosis; T2, approximately 2-3 week...

ORGANISM(S): Homo sapiens (Human)

2026-10-16 | PAD000065 | Pride

Bicarbonate supplementation enhances growth and biochemical composition of Dunaliella salina V-101 by reducing oxidative stress induced during macronutrient deficit conditions.

Not available

S-EPMC5934444 | biostudies-literature

Ceramide 1-phosphate is required for the translocation of group IVA cytosolic phospholipase A2 and prostaglandin synthesis.

Not available

S-EPMC2785377 | biostudies-literature

Measuring Nanoscale Chromatin Heterogeneity with Partial Wave Spectroscopic Microscopy.

Not available

S-EPMC5983358 | biostudies-literature

Community-Based Health Financing and Child Stunting in Rural Rwanda.

Not available

S-EPMC4743535 | biostudies-literature

Identification of antimicrobial peptides isolated from the skin mucus of African Catfish, Clarias gariepinus (Burchell, 1822)

Antimicrobial peptides (AMPs) constitute a broad range of bioactive compounds in diverse organisms, including fish. They are effector molecules for the innate immune response, against pathogens, tissue damage and infections. Still, AMPs from African Catfish, Clarias gariepinus skin mucus are largely...

ORGANISM(S): Clarias gariepinus

2021-12-01 | PXD029193 | Pride

And uganda Antimicrobial peptides Mic African catfish Skin mucus

Immune response to tissue-restricted self-antigens induces airway inflammation and fibrosis following murine lung transplantation.

Not available

S-EPMC4169463 | biostudies-literature

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