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MetabolomicsDynamic utilization of low-molecular-weight organic substrates across a microbial growth rate gradient

AIM: Low-molecular-weight organic substances (LMWOSs) are at the nexus between micro-organisms, plant roots, detritus and the soil mineral matrix. The nominal oxidation state of carbon (NOSC) has been suggested as a potential parameter for modelling microbial uptake rates of LMWO...

2023-08-14 | MTBLS3558 | MetaboLights
TranscriptomicsSpecific growth rate dependent transcriptome profiling of Escherichia coli K12 MG1655 in accelerostat cultures
Specific growth rate dependent gene expression changes of Escherichia coli K12 MG1655 were determined by microarray and real time PCR analyses. The bacteria were cultivated on glucose limited minimal medium using the accelerostat method (A-stat), where starting from steady state conditions in a chem...
ORGANISM(S): Escherichia coli 
2010-05-22 | E-GEOD-18183 | biostudies-arrayexpress
ProteomicsA quantitative metabolic analysis reveals Acetobacterium woodii as a flexible and robust host for formate-based bioproduction
Cheap and renewable feedstocks such as the one carbon substrate formate are emerging for sustainable production in a growing chemical industry. By quantitatively analyzing physiology, transcriptome, proteome in chemostat cultivations in combination with computational analyses, we investigated the ac...
ORGANISM(S): Acetobacterium woodii 
2023-03-08 | PXD026569 | Pride
Mixed gas fermentation Continuous fermentation Metabolic modelling Substrate co-utilization Acetogens Omics analysis Formate bioeconomy 
UnknownImproving Methanol Utilization by Reducing Alcohol Oxidase Activity and Adding Co-Substrate of Sodium Citrate in Pichia pastoris.
Not available
S-EPMC10142128 | biostudies-literature
TranscriptomicsCsac growth on model substrates found in lignocellulose
The co-utilization of hexoses and pentoses derived from lignocellulose is an attractive trait for in microorganisms considered for consolidated biomass processing to biofuels. This issue was examined for the H2-producing, extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus growing ...
ORGANISM(S): Caldicellulosiruptor saccharolyticus 
2010-05-16 | E-GEOD-17427 | biostudies-arrayexpress
TranscriptomicsCsac growth on monosaccharides found in lignocellulose
The co-utilization of hexoses and pentoses derived from lignocellulose is an attractive trait for in microorganisms considered for consolidated biomass processing to biofuels. This issue was examined for the H2-producing, extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus (Csac) g...
ORGANISM(S): Caldicellulosiruptor saccharolyticus 
2010-05-16 | E-GEOD-17425 | biostudies-arrayexpress
UnknownThe Thermoanaerobacter glycobiome reveals mechanisms of pentose and hexose co-utilization in bacteria.
Not available
S-EPMC3192829 | biostudies-literature
TranscriptomicsTranscription profiliing of mouse caveolin-1 knockout hearts
Hearts Lacking Caveolin-1 Develop Hypertrophy with Normal Cardiac Substrate Metabolism Experiment Overall Design: 3 wild types, 3 knockouts
ORGANISM(S): Mus musculus 
2009-03-15 | E-GEOD-10849 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae to investigate formaldehyde as source of free-energy during growth on glucose
Previously, it has been demonstrated that formate can be utilized by Saccharomyces cerevisiae as additional energy source using cells grown in a glucose-limited chemostat. Here, we investigated utilization of formaldehyde as co-substrate. Since endogenous formaldehyde dehydrogenase activities were i...
ORGANISM(S): Saccharomyces cerevisiae 
2008-10-18 | E-GEOD-8902 | biostudies-arrayexpress
UnknownCo-utilization of glucose and xylose in synthetic Escherichia coli consortia for efficient 2-hydroxy-3-methylvalerate biosynthesis.
Not available
S-EPMC12645685 | biostudies-literature
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