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ProteomicsUFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER
Supporting MS data for paper (doi: 10.1038/s41586-024-07073-0) by DaRosa P.A., Penchev I. et al., titled "UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER". Index of MS supporting files uploaded: Related to Related to Fig. 1b, c (xb01004(UFM1), xb01005(SBP-UFM1): LFQ IP-MS (Un...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-12-22 | MSV000093721 | MassIVE
ProteomicsUFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER
Supporting MS data for paper (doi: 10.1038/s41586-024-07073-0) by DaRosa P.A., Penchev I. et al., titled "UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER". Index of MS supporting files uploaded: - Related to Fig. 1a and Extended Data Fig. 1a (AO3435-AO3440: TMT proteomics (Un...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-11-27 | MSV000093510 | MassIVE
TranscriptomicsExpression data from Drosophila S2 cells depleted of exosome subunits
The exosome complex and its' subunits are vital for proccessing and or degrading many cellular RNAs. We used microarrays to detail the global changes in mRNA levels in response to exosome subunit depletion. RNA was extracted from dsRNA treated S2 cells and hybridized using Affymetrix microarrays. We...
ORGANISM(S): Drosophila melanogaster 
2010-04-12 | E-GEOD-17874 | biostudies-arrayexpress
GenomicsCondensin association with chromosomes depends on a DNA binding domain formed by its HEAT-repeat subunits
Condensin protein complexes play central roles in the three-dimensional organization of chromosomes during mitotic and meiotic cell divisions. How condensin interacts with its chromatin substrates to promote sister chromatid decatenation and segregation is largely unknown. Previous work suggested th...
ORGANISM(S): Saccharomyces cerevisiae 
2014-05-16 | E-GEOD-55948 | biostudies-arrayexpress
ProteomicsSmall and large ribosomal subunit deficiencies lead to distinct gene expression signatures that reflect cellular growth rate
Levels of the ribosome, the conserved molecular machine that mediates translation, are tightly linked to cellular growth rate. In humans, ribosomopathies are diseases associated with cell-type-specific pathologies and reduced ribosomal protein (RP) levels. Because gene expression defects resulting f...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2018-10-12 | MSV000083033 | MassIVE
GenomicsAssociation of cohesin subunits on chromosomes
Association of cohesin subunits on chromosomes
PRJNA491718 | ENA
TranscriptomicsTranscription profiling of Drosophila wild type and bap170;bap180 double mutant reveals two PBAP chromatin remodeling complex-specific subunits have distinct, redundant functions during development
Chromatin remodeling complexes control the availability of DNA binding sites to transcriptional regulators. Two distinct forms of the major SWI/SNF-related complex that have different activities in vitro can be distinguished by the presence of specific accessory subunits. In Drosophila, the core Bra...
ORGANISM(S): Drosophila melanogaster 
2009-10-21 | E-GEOD-11825 | biostudies-arrayexpress
ProteomicsAbsolute quantification of ribosome subunits
we prepared synthetic proteins corresponding to 80 of the ribosome subunits by stable isotope labeling and then performed absolute quantification.
ORGANISM(S): Mus Musculus (mouse) 
2023-03-16 | PXD034018 | JPOST Repository
GenomicsMitotic bookmarking by SWI/SNF subunits
Mitotic bookmarking by SWI/SNF subunits
PRJNA783609 | ENA
TranscriptomicsmRNA expression profiling of mitochondrial subunits in subjects with Parkinson’s disease
Introduction: Parkinson's disease (PD), typically developing between the ages of 55 and 65 years, is a common neurodegenerative disorder caused by a progressive loss of dopaminergic neurons due to the accumulation of α-synuclein in the substantia nigra. Mitochondria are known to play a key role in c...
ORGANISM(S): Homo sapiens 
2022-01-01 | E-MTAB-9950 | biostudies-arrayexpress
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