Sullivan N N - OmicsDI

OmicsDI

Browse
Submit Data
Databases
API

2692 Results

Show all Save search Copy query

Show results for

Unknown (2547)
Transcriptomics (83)
Proteomics (34)
Genomics (24)
Metabolomics (4)

Organisms

Homo sapiens (51)
Mus musculus (22)
Arabidopsis thaliana (13)
Candida albicans (6)
Rattus norvegicus (4)
Caenorhabditis elegans (3)
Danio rerio (3)
Phytophthora ramorum (2)
Toxoplasma gondii (2)
Drosophila melanogaster (2)
Escherichia coli (2)
Paracoccus denitrificans PD1222 (1)
Morone saxatilis (1)
Cardiocondyla obscurior (1)
Mustela putorius furo (1)
Phytophthora infestans (1)
Notophthalmus viridescens (1)
Phytophthora sojae (1)
Arabidopsis lyrata (1)
Anaplasma phagocytophilum (1)
Xenopus laevis (1)
Candida dubliniensis (1)
Burkholderia cepacia (1)
Populus trichocarpa (1)
Geobacter sulfurreducens (1)
Mycobacterium tuberculosis (1)
Bos taurus (1)
Oryza sativa Japonica Group (1)
Sus scrofa (1)
219334 (1)

Organisms

Homo sapiens (5)
Mus musculus (3)

Repository

biostudies-arrayexpress (89)
pride (30)
EGA (10)
ENA (8)
MassIVE (4)
MetaboLights (3)
GNPS (1)

Tissue

Cell culture (6)
Brain (4)
Blood (2)
Egg (2)
Epithelial cell (2)
Head (2)
Amniotic fluid (1)
Barrett's esophagus (1)
Blood plasma (1)
Epithelial cell of lung (1)
Epithelium of esophagus (1)
Erythrocyte (1)
HeLa cell (1)
Liver (1)
Malignant cell (1)
Myeloid cell (1)
Permanent cell line cell (1)
Plant cell (1)
Seedling (1)
Small cell lung cancer cell (1)
T cell (1)
Urinary bladder (1)

Disease

Optic atrophy 1 (2)
Normal (1)
Breast cancer (1)
COVID-19 (1)
Esophagus adenocarcinoma (1)
Lung cancer (1)
Multiple myeloma (1)
Plasmodium malariae malaria (1)
Temporal lobe epilepsy (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (12)
Bottom-up proteomics (6)
Data-dependent acquisition (4)
Data-independent acquisition (4)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)

Instrument Platform

Q Exactive (2)
Illumina iScan (1)
Bioanalyser (1)
G2565BA DNA microarray scanner [Agilent] (1)
Variable Atmosphere Incubator (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Nuclear Magnetic Resonance (NMR) - (1)
TSQ Vantage (Thermo Scientific) (1)

Publication Date

2013 (17)
2010 (16)
2011 (10)
2014 (8)
2008 (8)
2015 (7)
2025 (7)
2016 (6)
2024 (6)
2026 (6)
2012 (5)
2009 (5)
2019 (5)
2021 (4)
2022 (4)
2007 (3)
2017 (3)
2018 (2)
2005 (1)
2004 (1)
2023 (1)

CHEBI ID

CHEBI:18012 (3)
CHEBI:30769 (3)
CHEBI:30915 (3)
CHEBI:44897 (3)
CHEBI:14314 (2)
CHEBI:15354 (2)
CHEBI:15356 (2)
CHEBI:15611 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:16027 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16610 (2)
CHEBI:16695 (2)
CHEBI:16708 (2)
CHEBI:16811 (2)
CHEBI:16865 (2)
CHEBI:17202 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)
CHEBI:17750 (2)
CHEBI:17822 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:22660 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:26271 (2)
CHEBI:27266 (2)

Metabolite Name

Adenine (2)
Adenosine (2)
Citric acid (2)
Fumaric acid (2)
Uracil (2)
(2-aminoethyl)phosphonic acid (1)
(2R,3Z)-phycocyanobilin (1)
1-monolinolein (1)
11-trans-octadecenoic acid (1)
2,5-dihydroxypyrazine (1)
2-hydroxypyridine (1)
2-linoleoylglycerol (1)
2-palmitoylglycerol (1)
3,4-dihydroxybenzoic acid (1)
3-(3-hydroxyphenyl)propionic acid (1)
3-(4-hydroxyphenyl)propionic acid (1)
3-aminoisobutyric acid (1)
3-deoxyhexonic acid (1)
3-hydroxyisobutyric acid (1)
3-hydroxypyridine (1)
3-methylpiperazine-2,5-dione (1)
4-amino-5-aminomethyl-2-methylpyrimidine (1)
4-amino-5-hydroxymethyl-2-methylpyrimidine (1)
4-aminobenzoic acid (1)
4-hydroxybenzoic acid (1)
4-hydroxyphenylacetic acid (1)
5'-S-methyl-5'-thioadenosine (1)
5-aminovaleric acid (1)
5-hydroxyindole-3-acetic acid (1)
5-hydroxyvaleric acid (1)

First Public Date

2014 (8)

Study type

Transcription profiling by array (51)
RNA-seq of non coding RNA (15)
RNA-seq of coding RNA (8)
ChIP-seq (6)
Comparative genomic hybridization by array (5)
Unknown experiment type (1)
ChIP-chip by array (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (282)
2023 (273)
2025 (259)
2021 (250)
2024 (240)
2020 (191)
2019 (186)
2018 (153)
2017 (120)
2016 (108)
2015 (104)
2014 (96)
2013 (75)
2011 (52)
2010 (49)
2012 (46)
2026 (44)
2009 (31)
2008 (28)
2007 (12)
2005 (10)
2006 (10)
2004 (6)
2002 (5)
1998 (2)
2001 (1)
2000 (1)
1999 (1)
1997 (1)

Lab affiliation

Lecturer/Associate Professor, School of Biomolecular and Biomedical Science, UCD Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland (2)
Protim Irset Inserm U1085 (2)
2Proteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA 91125 (1)
Arizona State University Biodesign Institute Neurodegenerative Disease Research Center (1)
Barnett Institute of Chemical and Biological Analysis, Department of Chemistry and Chemical Biology, Northeastern University, 360 Huntington Ave., Boston, Massachusetts 02115, United States (1)
Center for Bio/Molecular Science & Engineering (Code 6900), US Naval Research Laboratory, Washington DC, USA (1)
College of Medicine and Public Health, FHMRI, Flinders University, Australia (1)
Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, USA (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA (1)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research (CNCR), Amsterdam Neuroscience, VU University Amsterdam, The Netherlands (1)
Department of Pathology Cancer Center Stony Brook University (1)
Department of Physiology and Medical Physics, Royal College of Surgeons in Ireland, 123 St. Stephen’s Green, Dublin 2, Ireland. Centre for Systems Medicine, Department of Physiology and Medical Physics, Royal College of Surgeons in Ireland, 123 St Stephen’s Green, Dublin 2, Ireland. (1)
Dept. of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. (1)
Division of Geological and Planetary Sciences, California Institute of Technology, USA (1)
Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (1)
Human Immunological Diseases Section, Laboratory of Clinical Immunology and Microbiology, Division of Intramural Research, NIAID, NIH, Department of Health and Human Services, Unites States Government (1)
Institute of Molecular, Cell and Systems Biology, University of Glasgow, UK (1)
Laboratory of Animal Histology, Faculty of Biology, “Alexandru Ioan Cuza” University of Iasi, Carol I Bvd. No. 22, Iasi 700505, Romania (1)
Malaria Immunology Laboratory, The Francis Crick Institute, London, UK (1)
Oerthbio (1)
Professor, Human Biology, Fred Hutchinson Cancer Center, USA (1)
School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin (1)
Stanford University Canary Center at Stanford for Cancer Early Detection (1)
Systems Biology Ireland, University College Dublin (1)
UCD School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland (1)
UNC LCCC, Pharmacology (1)
University of Pittsburgh (1)
Wilhelmina Children’s Hospital University Medical Center Utrecht Lundlaan 6 3584 EA Utrecht The Netherlands (1)